Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 145 8e-30 seq5 129 6e-25 seq1077 104 3e-17 seq131 104 3e-17 >seq1 Length=4220646 Score = 145 bits (160), Expect = 8e-30 Identities = 355/530 (67%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||||||||| | || ||||||||| | | ||||| || ||||| || | || Sbjct 1713369 GAGAGGCCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGAC 1713428 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||| ||| | ||||| |||||| || | |||||| | || || Sbjct 1713429 GC-TGCTATTGAGACCTACAATCTAATGTCTGAAAAGTGGTTGATTCACGCCTCACCCAC 1713487 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||||| ||||| || || | | ||||| Sbjct 1713488 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATGAA 1713547 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| ||||| || || || || |||||||| | ||||| | ||||| || Sbjct 1713548 GGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAA 1713607 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAA--CGGCACAC--CAATCA 53468 ||||||| |||||| | || || || || | | | |||| | | || ||| Sbjct 1713608 CGCGGGTGGGATCGGTCT-CAATGTTC--AC-TGCATCCGAAGCAAGAATACGTTTATCG 1713663 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || ||||| || |||||||||| ||| | Sbjct 1713664 CTGGAACTAATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCG 1713723 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || || ||| | ||||| || || || || | || |||||||| ||||| | Sbjct 1713724 CTCGTTATGTCGATCAGGGAGGCAATAAACGACCCGGTGCCTTTGCCATCTATCTCGAAC 1713783 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 | ||||| | || | || ||||| | ||| | || ||| || | ||||||| Sbjct 1713784 CATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGA 1713843 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||| || || || || || || |||||||| || || |||||| Sbjct 1713844 TTCGCGCTCGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATG 1713893 >seq5 Length=2931570 Score = 129 bits (142), Expect = 6e-25 Identities = 367/556 (66%), Gaps = 11/556 (2%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| || |||| || || ||| | ||||||||||| || |||||||| Sbjct 2232962 GCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTT 2233021 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| | || |||||| ||||| | ||| || | | || || Sbjct 2233022 CTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAA 2233081 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAGCCCATTC 74944 || || || || | |||| ||||||| | | | ||||| | ||||||| || Sbjct 2233082 CGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATC 2233141 Query 74945 AGCTTTTCGTTTGACCGCAGGGACA-GTATCGATCGCTTGGAAGAGGC--TTGCCTTCTC 75001 || || | | | | || || | || | || || | || || | || |||| Sbjct 2233142 GGCCTT-CTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTA 2233200 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 | |||||||||||| | ||||||| ||| |||||| | || |||||||| | | Sbjct 2233201 --CCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATTTCAGAATGAAT-GTTTT 2233257 Query 75062 GTTGAACGACTGGTA-CGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA 75120 | ||||| | | | || ||| | || ||||| | ||| || || || || ||| Sbjct 2233258 CTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAA 2233317 Query 75121 AATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 |||||| | ||| || | |||||||| || ||| ||||| ||||||| || Sbjct 2233318 AATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACAT 2233377 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 || ||||| ||||| | ||| | || | ||||| || | || ||| ||| | Sbjct 2233378 ACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTA 2233437 Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300 |||||| ||||| || ||||||||| ||| ||| || ||||| || ||| | | Sbjct 2233438 AATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATAT 2233497 Query 75301 CAGGGTAATTGATTGG 75316 || |||| | ||| || Sbjct 2233498 CATGGTATTGGATGGG 2233513 >seq1077 Length=20753 Score = 104 bits (114), Expect = 3e-17 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| |||||||| ||||| | || | |||||||||||| || ||||||||||||| Sbjct 5927 GGCG-GTGAAAATATAACGGGCAGAAGCGGAATCCTTGCCACCGGCGAGACGCGTACCGA 5869 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || ||| ||| ||| || || |||||||||| || ||||||| ||||||| Sbjct 5868 ACTGACCATAGGGCATCAACAGATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGTC 5809 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 | || || || |||| | |||| |||||||| || | | | ||| |||||| Sbjct 5808 CAATGATGGTGCCCATGAGGGACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCACG- 5750 Query 117480 AGC-CCGC-CAGCTGAGCCACCTTCATGTC 117507 || |||| || |||||||||||| || || Sbjct 5749 -GCACCGCACAACTGAGCCACCTTAATTTC 5721 >seq131 Length=238489 Score = 104 bits (114), Expect = 3e-17 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 117300 GGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGA 117359 |||| |||||||| ||||| | || | |||||||||||| || ||||||||||||| Sbjct 5927 GGCG-GTGAAAATATAACGGGCAGAAGCGGAATCCTTGCCACCGGCGAGACGCGTACCGA 5869 Query 117360 ATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 | || ||| ||| ||| || || |||||||||| || ||||||| ||||||| Sbjct 5868 ACTGACCATAGGGCATCAACAGATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGTC 5809 Query 117420 TGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 | || || || |||| | |||| |||||||| || | | | ||| |||||| Sbjct 5808 CAATGATGGTGCCCATGAGGGACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCACG- 5750 Query 117480 AGC-CCGC-CAGCTGAGCCACCTTCATGTC 117507 || |||| || |||||||||||| || || Sbjct 5749 -GCACCGCACAACTGAGCCACCTTAATTTC 5721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168802620000