Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq52 111 1e-19 seq15 100 2e-16 >seq52 Length=575441 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||||| || |||||||||||||||||| || || Sbjct 526357 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 526298 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || || || ||||| |||| ||| || |||||||| || Sbjct 526297 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 526238 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || || | ||||||||| | ||||| Sbjct 526237 ATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 526179 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || ||||| | |||||||||||||| ||||| Sbjct 526178 CTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||| || || ||||||||||||||| || || || Sbjct 526586 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 526527 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || | ||| ||||| ||||| || |||||||| ||||| || || Sbjct 526526 AAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 526467 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| |||| || | ||| | || | || | Sbjct 526466 AATGCCTTCCTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAA 526408 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||||| || || ||||||| || || |||||||||||||| Sbjct 526407 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||| || || ||||||||||||||| ||||| ||||| || || Sbjct 526804 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGA 526745 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | || ||||| || || || ||||||||||| || || || | |||||| Sbjct 526744 CCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCC 526685 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | || ||| | ||| | || | || ||||| | || Sbjct 526684 TTATCTTGGATC-TTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGT 526626 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || || |||| || || ||||| ||||||||| Sbjct 526625 TATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCATG 526586 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||| | || || ||| ||||||||| ||||| || || || Sbjct 537712 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 537653 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | || || || || || || || || || ||||| || || Sbjct 537652 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGG 537593 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| |||| || ||| | ||| | ||| | ||||| Sbjct 537592 AATGCCCTCCTTGTCCTGGATC-TTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCA 537534 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| ||||||| || ||||| || |||||||| Sbjct 537533 CCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 537485 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || || ||||||||||||||| || || ||||| || || Sbjct 519436 AGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGA 519495 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | ||||| || ||||| || |||||||| || ||||| || | ||||| Sbjct 519496 CCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCT 519555 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || || | ||| | || ||| || || | ||| Sbjct 519556 TTGTCT-TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 519614 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || ||||| | ||| |||||||| || |||||| ||| Sbjct 519615 GATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGATGA 519658 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||||| || || || ||| || |||||||| || || || || || || | Sbjct 527030 ACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACC 526971 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | || || || || || || || || || ||||| || || | |||||||| Sbjct 526970 ATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 526911 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| |||| || | || ||| | || | ||| | |||||| |||| ||| | Sbjct 526910 GTCCTGGATC-TTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGA 526852 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| | ||||| ||||| |||||||| Sbjct 526851 TGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 >seq15 Length=1207391 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| || |||||||||||| ||||| || || || || ||| |||| || | || Sbjct 831643 ATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTG 831702 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 |||||||| || || | || ||||| || || || | |||||| |||||| ||| || Sbjct 831703 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGAT-TT 831761 Query 34623 TTGTTTTAACGATAAAATTG---TGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||| ||| | | || | ||| | ||| || || | |||||| ||||| || Sbjct 831762 TTGCTTTTACGTTCTCAATGGAATCACTTGG--CTCAACCTCAAGGGTTATGGTTTTTCC 831819 Query 34680 GGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| ||||| Sbjct 831820 AGTGAGAGTCTTAACAAAAATTTGCAT 831846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703133207700