Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq52 183 7e-41 seq15 163 7e-35 seq4 134 3e-26 >seq52 Length=575441 Score = 183 bits (202), Expect = 7e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || ||||||||||| |||||||| ||||||||||| || || | || Sbjct 537709 TCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAG 537650 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||||| ||||||||| |||||||| | ||||| ||||| || |||| Sbjct 537649 GGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAAT 537590 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||||||||||||| |||||||| || || | |||| | || ||||| Sbjct 537589 GCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTC 537530 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || || || |||||||| || || | ||||||| Sbjct 537529 CAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 537484 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| ||||||||||| || ||||||||||| || || | | ||| Sbjct 537250 ACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGT 537191 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || ||||| |||||||| || || || |||| || Sbjct 537190 GCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCC 537131 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| |||||| ||||| || || || | |||| | || ||||| || Sbjct 537130 CTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAG 537071 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | |||||| || || | ||||| Sbjct 537070 TGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| || ||||| || || | || || | ||||| Sbjct 527026 AGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCC 526967 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| ||||||||||| | ||||| ||||| || |||| || ||||||||| Sbjct 526966 TCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCC 526907 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || || | |||| | || ||||| | ||||| ||| Sbjct 526906 TGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATGGTC 526847 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| | |||||| Sbjct 526846 TTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||||| || || || || || ||||| || || | | || Sbjct 518859 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 518918 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||||||| |||||||| | ||||| ||||||||||||| || Sbjct 518919 GCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCC 518978 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| ||||| || || || | |||| || ||||| | Sbjct 518979 CTCCTTATCATGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAA 519038 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| ||||| | |||||| Sbjct 519039 CGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | |||||| || |||||||| || ||||| || || | | || Sbjct 519204 ACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGT 519263 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | |||||| ||||| ||||| | ||||| ||||| || || | || Sbjct 519264 GCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCC 519323 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || || || | |||| || ||||| | Sbjct 519324 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAA 519383 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| ||||| | ||||| Sbjct 519384 CGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| ||||| ||||| || || | ||| || | ||||| Sbjct 527710 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCC 527651 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| || ||||| | || || || || || || | || || ||||| Sbjct 527650 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 527591 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | ||| ||||||||||| ||||| ||| Sbjct 527590 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 527531 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || | |||||| Sbjct 527530 TTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | |||||| || |||||||| || ||||| || || | | || Sbjct 527948 ACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGT 527889 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | |||||| ||||| ||||| | ||||| ||||| || || | || Sbjct 527888 GCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCC 527829 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| |||||||| || || | |||| || ||||| | Sbjct 527828 CTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAA 527769 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| ||||| | ||||| Sbjct 527768 CGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||||||||| || || || || || ||||| || || | | || Sbjct 528176 ACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGT 528117 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||||||| |||||||| | ||||| ||||| || || | || Sbjct 528116 GCGACCATCCTCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGTATGCC 528057 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || |||||| ||||| || || || | |||| || ||||| | Sbjct 528056 CTCCTTTTCTTGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGCTCCACCTCCAA 527997 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| ||||| | |||||| Sbjct 527996 CGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || || || ||||| || || | ||||| | ||||| Sbjct 527482 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCC 527423 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| | || || || ||||| |||| || ||||| ||| Sbjct 527422 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 527363 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || ||||| || || || ||||| ||| ||| || || || || || Sbjct 527362 TGAATTTTGGCCTTCACATTCTCAATTGTGTC---GCTAGGTTCCACTTCCAGCGTAATA 527306 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | ||||| Sbjct 527305 GTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| || ||||| ||||| ||||| || || | ||| |||| || || Sbjct 519442 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCC 519501 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| || ||||| | || || || || || || | || || ||||| Sbjct 519502 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 519561 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | ||| ||||||||||| ||||| ||| Sbjct 519562 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 519621 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 519622 TTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || ||||| || || ||||| || || | | || | ||||| Sbjct 527254 AGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCC 527195 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| ||||| ||||| | ||||| ||||| || || | || ||||| ||| Sbjct 527194 TCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCC 527135 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || || | |||| || ||||| | || || ||| Sbjct 527134 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 527075 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 527074 TTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 >seq15 Length=1207391 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||||||| ||||| || || || ||||| ||||| || ||||| || | || ||| Sbjct 831626 CGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTC 831685 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| |||||| || ||||||||||| |||||||| || || || | ||| Sbjct 831686 CGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCC 831745 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 || ||||| ||||| ||| ||| ||||| || |||| ||| ||| |||||||| Sbjct 831746 TCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCA---CTTGGCTCAACCTCA 831802 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || || || ||||| ||||||||||| ||||| | |||||| | |||| Sbjct 831803 AGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTGGT 831854 >seq4 Length=3027866 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || || || || ||||| | | || | |||||| Sbjct 343654 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 343713 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || || ||||| || |||||||| || |||| || |||||||| Sbjct 343714 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 343773 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || | || ||| || ||||| |||||||| || Sbjct 343774 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 343833 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || ||||| | |||||| Sbjct 343834 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159049523718500