Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15 118 7e-22 seq4 102 6e-17 seq52 89.7 3e-13 >seq15 Length=1207391 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || ||||| |||||||| || || || || ||||| | | Sbjct 831847 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 831788 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||| | ||||| |||||| |||||||| || |||| |||||||| Sbjct 831787 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 831728 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || ||||| || || |||| |||| || ||| | ||| || || Sbjct 831727 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAA 831668 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| ||| | ||| | ||| |||| | |||||||| Sbjct 831667 TATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGG 831620 >seq4 Length=3027866 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || || ||||| |||||||| || || || || | Sbjct 343865 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 343806 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || ||| ||||| || || | || ||||| || Sbjct 343805 GATTCTATTGAGAATGTGAAGGC-TAAGATTCAAGACAAGGAGGGGATTCCACCAGACCA 343747 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| ||||| ||| |||| || | ||| | ||| |||||||| Sbjct 343746 ACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAA 343687 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 343686 TATTCAGAAGGAGTCAAC 343669 >seq52 Length=575441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || || || || |||||||| ||| Sbjct 526359 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 526418 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | |||| || || || || ||||| | || ||||| || Sbjct 526419 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 526478 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || || ||| |||| || | |||||| | ||| |||||| Sbjct 526479 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACAAC 526538 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 526539 ATTCAAAAGGAGTCAAC 526555 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || || || || |||||||| ||| Sbjct 526587 ATGCAGATCTTTGTCAAGACTCTAACAGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 526646 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | |||| || || || || || || | || ||||||||| Sbjct 526647 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAA 526706 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || || || ||||||||| |||||| | ||||||||| Sbjct 526707 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 526766 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 526767 ATTCAAAAGGAGTCAAC 526783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337981175505200