Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 192 5e-44 >seq5 Length=2931570 Score = 192 bits (212), Expect = 5e-44 Identities = 393/578 (68%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || |||||||| || | ||||| |||| || ||||| |||||| ||| || | Sbjct 2232942 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 2233001 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| | ||| || ||||| || || | |||||||| |||||||||||| Sbjct 2233002 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 2233061 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT- 4726 | ||| || | || || ||||| || | || | || ||| || |||| | ||| Sbjct 2233062 ACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG--TGCCTTTTTATTTG 2233119 Query 4727 -AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| | | ||||| | || || || ||| ||||| | || | || |||| Sbjct 2233120 CAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGT 2233179 Query 4786 TAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 |||| | | | | || | | || || | | || || || || || || | Sbjct 2233180 TAAACAGAAAGTCGCGTTCTACC---GGATCCTTGACGTAGGTATCAATCAGAAGAGAGT 2233236 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||||||||| || ||||||| || | || | ||| ||||| || | ||| || | Sbjct 2233237 ACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGG 2233296 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTATACCGTCACTG 4961 | ||| || ||||||||||| || | | || ||||| || || || || |||||| Sbjct 2233297 GAATTTGGACCTCGTTACAAAAA-TTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 2233355 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || || || || ||||| |||| || || |||| | ||| || ||||| ||| | Sbjct 2233356 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 2233415 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 |||| | | ||| || | |||||||||||| ||||| ||||| || || || ||||| Sbjct 2233416 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCT 2233475 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| | |||||||||| | || || || || Sbjct 2233476 TTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGG 2233513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427013687797700