Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 seq1 219 6e-52 >seq5 Length=2931570 Score = 250 bits (276), Expect = 3e-61 Identities = 513/754 (68%), Gaps = 19/754 (3%) Strand=Plus/Plus Query 48011 ACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGT 48070 ||||||||| || ||||| | || || || || || |||||||| || ||| ||| | Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 48071 GACAGCATCCACTATTATCGATGTTA----CCGTTTCCTCACTTGG--TGGATACAACAA 48124 ||| || ||| || ||||| | || ||||| | | || || |||| | Sbjct 2232872 GACCGCCTCCCTCAT----GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA- 2232926 Query 48125 ATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTC 48184 |||||||| || | ||||||||||| || || |||||||||| ||| || | || Sbjct 2232927 -TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 2232985 Query 48185 GTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAA 48244 |||| ||| ||||| || ||||| || ||||| || |||||||| || || | || || Sbjct 2232986 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 2233045 Query 48245 AGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-AC 48303 || ||||||||||||| ||| || | || || || || || | ||| |||| Sbjct 2233046 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 2233105 Query 48304 TGGCTTCGT-TGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCAT 48361 || ||| | | || ||||||| | |||||||| |||||||| ||||| |||| Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 48362 TGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTAT 48421 |||| || || ||||| ||||||| ||| ||| || ||||| ||||| || Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAAT 2233225 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | |||| |||||||| || ||||| ||||| | || | || | ||| |||||||| Sbjct 2233226 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 2233285 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCATTTACT 48539 | || || | || || ||||| ||||||| ||| || | ||| ||||| || Sbjct 2233286 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 2233343 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || |||||||| || || || || || || |||| ||| || | ||| | Sbjct 2233344 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 2233403 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 | || | | ||||||| ||| ||| || | || ||| ||||| ||| ||||||| || Sbjct 2233404 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 2233463 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACA 48719 || || | ||||| || || | | ||| |||||| ||||||||| || | | ||| Sbjct 2233464 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 2233523 Query 48720 AATCTATTTGGATTTTTTGCAAGGATAGGTTCCA 48753 ||||| ||||| |||| |||||||||| Sbjct 2233524 AATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 219 bits (242), Expect = 6e-52 Identities = 425/623 (68%), Gaps = 6/623 (1%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| ||| || || || |||||| ||| | | || ||||| |||| ||| | Sbjct 1713988 TAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCC 1713929 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || || | ||| || | || ||| |||||| ||||| || ||||| || ||||| || Sbjct 1713928 ATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGT 1713869 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || ||||| || | | | |||||| || || ||||| | || | | Sbjct 1713868 GCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACA 1713809 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 |||| || | ||| | |||||||||||| ||||| || || | | || ||||||||| Sbjct 1713808 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTA 1713749 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || ||||||||||| | ||| | |||||| | || | || | | ||| || | || | Sbjct 1713748 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 1713689 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC-GCGAAT--ATTACTA 78272 || || || ||||| ||||||| ||| ||| | ||||| || || | | Sbjct 1713688 CCATTGGACTCCCCATTAGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 1713630 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 || || | || || || || || | || || || || || || |||| | || || Sbjct 1713629 ATTGAGA--CCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCA 1713572 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 || |||||||| |||||||| ||| |||| |||| | ||||||||||||||| ||| | Sbjct 1713571 TATATACCCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGG 1713512 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGT 78452 | | || || |||||||| | || || || || || | ||||| |||||||| | | Sbjct 1713511 TAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATT 1713452 Query 78453 AGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGC 78512 |||||||| || |||||||| | || | || |||||| |||| | || ||| Sbjct 1713451 AGATTGTAGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGC 1713392 Query 78513 ATCAACATATGCTGAGGTCTTTC 78535 || ||||| | |||||| || || Sbjct 1713391 ATAAACATGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694608884816000