Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 320 2e-82 seq1 226 4e-54 >seq5 Length=2931570 Score = 320 bits (354), Expect = 2e-82 Identities = 551/794 (69%), Gaps = 17/794 (2%) Strand=Plus/Plus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 |||| || |||||||| ||||||| ||| | ||||||||| || || || Sbjct 2232771 AGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATAAGA 2232830 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||| || || || || |||||||| || ||||||| |||| || ||| || Sbjct 2232831 TCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCAT---- 2232886 Query 46579 GATGTTA----CTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATG 46633 ||||| | | ||||| | | || | | || | | ||||||||| || | |||| Sbjct 2232887 GATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG-ACAATATGTTTAAAAATGAGGCATG 2232945 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 ||||||| || ||||||||||||| ||| || | |||||| ||| ||||| |||| Sbjct 2232946 CAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAG 2233005 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| || |||||||| |||||||| || || | || || || ||||||||||||| || Sbjct 2233006 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGC 2233065 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCC 46810 | || | ||| ||||| || || || | ||| |||| || | |||| ||||| Sbjct 2233066 CCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAATCC 2233125 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 |||| |||||||||| ||||| || ||||| |||| |||| || || ||||| | Sbjct 2233126 ACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACA 2233185 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 |||||| ||| | ||| || || || ||||| || | |||| |||||||| | Sbjct 2233186 GAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATTTCAG 2233245 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 ||||||||||||| | || | || | ||| |||||||| | || || | ||| || | Sbjct 2233246 AATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGA 2233305 Query 46991 CCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 |||| ||||||| ||| || | ||| ||||| || || |||||||| || || || Sbjct 2233306 CCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAA 2233363 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 || ||||| |||| ||| || | || | | | || | | ||||||| | Sbjct 2233364 GAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGT 2233423 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 || ||| || | || ||| ||||| ||| |||||||||| || || | ||||| || || Sbjct 2233424 GAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTA 2233483 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGC 47228 | | ||| |||||| | |||||||| || | | ||| ||||| ||||| | Sbjct 2233484 GAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTTCGGGGATTAGGAAC 2233543 Query 47229 AAGTATAGGTTCCA 47242 |||||||||||||| Sbjct 2233544 AAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 226 bits (250), Expect = 4e-54 Identities = 416/607 (69%), Gaps = 2/607 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || || |||||| ||| | | ||| || || |||| || ||| || | Sbjct 1713980 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 1713921 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||| || | || ||| ||| || ||||| || ||||| || ||||| || || | || Sbjct 1713920 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 1713861 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | | |||||| || || ||||| | || | |||| || Sbjct 1713860 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 1713801 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | |||||||||||| ||||| || || | |||| ||||||||||| ||||| Sbjct 1713800 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCC 1713741 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 |||||| | ||| | || ||| | || | || | | ||| || | || || || || Sbjct 1713740 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 1713681 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCA-CGAATATTACTAATAGATAGGC 76877 ||||| ||||||| ||| ||| | | ||| || || || | || | Sbjct 1713680 CTCCCCATTAGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAACATTGAGAC 1713622 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || || || |||| ||||| || ||||| |||| | |||||||| || |||| Sbjct 1713621 CGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCT 1713562 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | ||||| || ||| |||| |||| | ||||||||||||||| ||| | | | || | Sbjct 1713561 CGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCC 1713502 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | |||||||| | || || || || ||| | ||||| |||||||| | ||||||||| | Sbjct 1713501 CAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGG 1713442 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | |||||| | || || | ||| |||||| |||| | ||| ||||| ||||| | Sbjct 1713441 TCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGT 1713382 Query 77118 GCTGAGG 77124 |||||| Sbjct 1713381 ACTGAGG 1713375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712872909408000