Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq52 109 1e-18 seq15 104 5e-17 seq4 98.7 2e-15 >seq52 Length=575441 Score = 109 bits (120), Expect = 1e-18 Identities = 157/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||||||||| || || |||||||||||||| || | || || | ||||| Sbjct 537241 GAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATC 537182 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || || ||||| || | ||||| || | | || || ||||| Sbjct 537181 TTCCAACTGCTTT--CCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTG 537124 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTA 152066 || ||||| ||| || ||| |||||| ||| ||| ||| || || || || Sbjct 537123 TCCTGAATCTTTGCCTTCACATTCTCTATTGAGTC---ACTGGGCTCCACCTCCAGTGTG 537067 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || | |||||||||||||| ||||| Sbjct 537066 ATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 102 bits (112), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| |||||||||||||| || | || || | |||||| Sbjct 537696 AGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCT 537637 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || |||||||| | | |||||||| | | || || ||||| || Sbjct 537636 TCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 537577 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| || || |||| | ||| ||| ||| || || || || || Sbjct 537576 TGGATCTTTGCCTTCACGTTCTCAATCGAGTC---ACTGGGCTCCACCTCCAGTGTGATT 537520 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || |||||||||||||||| ||||||| Sbjct 537519 GTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 537484 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || || || || || |||||||| || | || || | ||||| Sbjct 527482 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCC 527423 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || |||||||| | | |||||| || | || || || ||||| || Sbjct 527422 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 527363 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | |||| | || ||||| || |||||||| Sbjct 527362 TGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTC 527303 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||| | ||||| Sbjct 527302 TTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 >seq15 Length=1207391 Score = 104 bits (114), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || |||||||| || || ||||| ||||| || || || |||| | ||| | | Sbjct 831629 AGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGC 831688 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || | || |||||||||||||||| || || || | | ||||| || Sbjct 831689 CCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 831748 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| |||||| ||| || |||| | | || ||| ||| || ||||| Sbjct 831749 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATC---ACTTGGCTCAACCTCAAGG 831805 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || ||||||||||| || || | |||||| Sbjct 831806 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 831847 >seq4 Length=3027866 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || || || |||||||| | ||| | | ||||| Sbjct 343654 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 343713 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || ||||| | ||| ||||| | | || || ||||| ||| Sbjct 343714 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 343773 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | || || ||| || |||||||| |||||| Sbjct 343774 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 343833 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| || | |||||| Sbjct 343834 TTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153718795029900