Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 190 2e-43 >seq5 Length=2931570 Score = 190 bits (210), Expect = 2e-43 Identities = 398/590 (67%), Gaps = 6/590 (1%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 ||||||||||| || ||||||||||| | ||| |||| || ||| ||| || | Sbjct 2232942 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 2233001 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | || || || || | ||| || || | ||||||||| || |||||||| Sbjct 2233002 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 2233061 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 | ||||||| ||| || || ||||| ||||| | | | ||| || | || | | Sbjct 2233062 ACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCA 2233121 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | | ||||| |||||| |||||| | |||| ||| || || Sbjct 2233122 ATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTA 2233181 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 || ||||| |||| | ||| | | || |||||||| || | | |||||| Sbjct 2233182 AACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATT 2233241 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 ||||||||||| ||||| | || | || | ||||||||||| | ||| || | | | Sbjct 2233242 TCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATT 2233301 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 || || || ||| |||| | || || |||||| ||||| || |||||||| || || Sbjct 2233302 TGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCG 2233361 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATCAGTTGATAATTTTTTCCAA 23985 |||||||| | ||||| || || || | | ||||| || | | ||| ||| Sbjct 2233362 AAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA-TTAAGA--CTTTCCCAG 2233418 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||| | | ||| || | |||||||||||| ||||||||||| ||| || | || | Sbjct 2233419 TCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTC 2233478 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCT 24095 || || | ||||||||||| | ||| || || | | |||||||| Sbjct 2233479 TTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 2233528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521443021660000