Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq52 132 3e-26 >seq52 Length=575441 Score = 132 bits (146), Expect = 3e-26 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | || ||||| ||||||||| |||||| || ||||| Sbjct 527279 TATTTGCATGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTT 527220 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| | ||| | || |||| |||||| || ||||||||||| || ||||| Sbjct 527219 GTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTG 527160 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | || | || ||||| ||| |||||| |||| | |||| |||| | ||| Sbjct 527159 GTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCAC 527101 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||||| |||||| ||||| || || || |||||||| || ||||||||| Sbjct 527100 TCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527042 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| |||||||| || ||||| || |||||||| || Sbjct 527501 CATACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTC 527442 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || |||| |||||| || || |||||||||||||||||||| | Sbjct 527441 TGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGG 527382 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| || || ||||| | | || |||||| | ||| Sbjct 527381 CGGAATACCCTCCTTATCCTGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTC 527322 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| |||||| ||||| || || || ||||||||||| ||||||||| Sbjct 527321 CACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCATG 527270 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| ||| |||||||||||||||||| || | || ||| | || || Sbjct 537694 CACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTC 537635 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||| || ||||| |||| || | || ||||| ||| Sbjct 537634 CAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 537575 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| |||| | || | ||| || |||||||||| || || || | Sbjct 537574 GATCTTTGCCTTCAC-GTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTT 537516 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||||||||| ||||| Sbjct 537515 TGCCGGTTAGAGTCTTCACGAAGATCTGCAT 537485 Score = 120 bits (132), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||| | | ||| ||||||||||| ||||||||| ||||| Sbjct 519417 TATTTGCATGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTT 519476 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| || || |||| |||| ||| || || |||||||||||||||||||| Sbjct 519477 GTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 519536 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||| | || | ||| || || || ||||| ||||| | | || | || Sbjct 519537 ATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACT 519596 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || ||||| | || || ||||| || || || |||||||| |||||||||||||| Sbjct 519597 AGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGAT 519656 Query 44341 G 44341 | Sbjct 519657 G 519657 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| ||||| || || ||||||||| ||||| || || Sbjct 526361 CATCCCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTC 526302 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||| ||||||||| |||||||| | ||| ||||| || | Sbjct 526301 AGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGG 526242 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || |||||| ||||| | | || |||||| || ||| Sbjct 526241 TGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTC 526182 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| |||||| ||||| || || || || ||||| || |||||||| Sbjct 526181 CACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||||| ||||||||| ||| || || |||||||| || Sbjct 527957 CATACCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 527898 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || | |||||| || ||||||||||| || ||||| || | Sbjct 527897 GGACAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGG 527838 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | |||| |||| | ||| | | Sbjct 527837 TGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCACTCGGCT 527779 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| |||||| ||||| || || || |||||||| || ||||||||| Sbjct 527778 CCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527726 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | | ||| || ||||| ||| ||||||||||||||||| Sbjct 537262 TTGCATTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTA 537203 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || || || | || |||| |||||| || |||||||||| || ||||||| Sbjct 537202 GTCAGACAAGGTG-CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGAT 537144 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 ||| || | || ||||| ||| ||||| ||||| | |||| | ||| || Sbjct 537143 CTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGG 537084 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || || || || || || | |||||||||||||||||||| Sbjct 537083 GCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||||| ||||||||| ||| || || |||||||| || Sbjct 519195 CATACCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 519254 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || | |||||| || ||||||||||| || ||||| || | Sbjct 519255 GGACAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGG 519314 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| ||||| | |||| | ||| | || Sbjct 519315 TGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTC 519374 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| |||||| ||||| || || || |||||||| || ||||||||| Sbjct 519375 CACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 519426 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || |||||||| ||||||||| |||||||| || Sbjct 526589 CATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTC 526530 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| ||||| || |||||||||||||||||||| |||| Sbjct 526529 GGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 526470 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || |||||| || | | |||| | || | ||| || || Sbjct 526469 TGGAATGCCTTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTT 526411 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||| || ||||| || || || ||||| || || || ||||| Sbjct 526410 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || |||||||| ||||||||| ||||||||||| Sbjct 526817 CATACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATC 526758 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| |||| |||||| || || || ||||||||||| ||||||| Sbjct 526757 AGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGG 526698 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | || | || || || Sbjct 526697 TGGAATGCCCTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCACTGGGTT 526639 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| || ||||| || || || ||||| || ||||| |||||| Sbjct 526638 CAACTTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCATG 526586 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||| | | ||| ||||||||||| ||||||||| ||||| Sbjct 527735 TATTTGCATGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTT 527676 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| |||| || ||| | || |||| ||| || || |||||||||||||||||||| Sbjct 527675 GTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 527616 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||| | || | ||| || || || ||||| ||||| | | || | || Sbjct 527615 ATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACT 527556 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | || || ||||| || || || ||||| |||||||| ||||| Sbjct 527555 AGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960127057300