Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15 161 2e-34 seq52 143 6e-29 seq4 102 2e-16 >seq15 Length=1207391 Score = 161 bits (178), Expect = 2e-34 Identities = 172/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | |||||||| || || |||||||| |||||||| || ||||| ||||| || Sbjct 831851 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-- 831794 Query 177976 GCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || | |||| |||||||| ||| ||| || || |||||||| ||||| || || Sbjct 831793 GCCAAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACC 831734 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || || ||||| |||||||||||||| || ||| | || || || ||||||| |||| Sbjct 831733 AGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGA 831674 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | ||||| || || ||||| ||||||||| | ||||| Sbjct 831673 CTATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACT 831629 >seq52 Length=575441 Score = 143 bits (158), Expect = 6e-29 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| ||| | || || ||||| ||||| || |||||||| || ||| Sbjct 537032 CAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 537089 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||||||||||||| || || || || || || |||| Sbjct 537090 ACTCAATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGC 537149 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 |||| || ||||| || ||||| ||| | |||||||| | || |||| | || || ||| Sbjct 537150 AACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCAC-CTTGTCTGACTACAAC 537208 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 537209 ATCCAAAAGGAATCCACTCTTCATCTTGT 537237 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || || || || || || ||||||||| | ||| Sbjct 526134 CAAATTTTTGTGAAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGAC 526193 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| ||||| || || || || |||||||||||| Sbjct 526194 ACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAA 526253 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || | || |||||| | Sbjct 526254 CGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATT 526313 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || || ||||| Sbjct 526314 CAAAAGGAGTCAACCCTCCACCTTGT 526339 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| ||||| || || ||||| ||||| || |||||||| || ||| Sbjct 537488 CAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGA--GCCCAGTG 537545 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || |||||| |||||||| || || || || || ||||||| Sbjct 537546 ACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGC 537605 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | |||||||| | || || | || || ||| Sbjct 537606 AACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAACA 537665 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || || ||||| Sbjct 537666 TCCAAAAGGAGTCCACCCTTCACCTTGT 537693 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || ||||| || || || || || || |||||||||||||| | ||| | | Sbjct 519650 CAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 519593 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 519592 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAGC 519533 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | || || || |||||||| |||| || ||| Sbjct 519532 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAACA 519473 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || ||||| || || || || Sbjct 519472 TTCAAAAGGAGTCAACGCTTCACCTAGT 519445 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| ||||| || || || |||||| | |||||||| || ||| Sbjct 526818 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGA--GCCCAGTG 526875 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| |||||||| || || || || || ||||||| Sbjct 526876 ACTCTATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAGC 526935 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| ||||| ||| | || ||||| | ||||| | || || ||| Sbjct 526936 AACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAACA 526995 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || || || || |||| Sbjct 526996 TTCAGAAAGAGTCGACGCTTCA-CTTG 527021 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || || || || || || |||||||||||||| | ||| | | Sbjct 527502 CAGATCTTCGTAAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTG--AGCCTAGTG 527559 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | || ||||| || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 527560 ATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAGC 527619 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| || || |||||| | || ||||| | |||||| |||| || ||| Sbjct 527620 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGCACTCTTTCCGACTACAACA 527679 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || ||||| || || || || Sbjct 527680 TTCAAAAGGAGTCAACGCTTCACCTAGT 527707 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || || || || || || || | |||||||| || || Sbjct 519422 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 519365 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| |||||||| || || ||||| |||||||||| Sbjct 519364 ACTCGATAGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGC 519305 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || ||||| ||| | |||||||| | || | |||| || ||| Sbjct 519304 AACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACA 519245 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || || || || |||| Sbjct 519244 TTCAGAAAGAGTCGACGCTTCA-CTTG 519219 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || || || || || || || | |||||||| || || Sbjct 527730 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 527787 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| ||||| || || || ||||| |||||||||| Sbjct 527788 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGC 527847 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || ||||| ||| | |||||||| | || | |||| || ||| Sbjct 527848 AACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACA 527907 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || || || || |||| Sbjct 527908 TTCAGAAAGAGTCGACGCTTCA-CTTG 527933 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || || || || || || || | |||||||| || || Sbjct 527046 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 527103 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || |||||||| || ||||| ||||| || || || ||||| |||||||||| Sbjct 527104 ACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGC 527163 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | ||||| || ||||| ||| | || ||||| | || | |||| || ||| Sbjct 527164 AACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACA 527223 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 527224 TTCAGAAGGAGTCGACGCTTCA-CTTG 527249 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || | |||||||| || || Sbjct 519077 CAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 519020 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || |||||||| || || || || || ||||| ||||||| Sbjct 519019 ACTCGATAGAGAATGTGAAGGCTAAGATTCATGATAAGGAGGGCATTCCTCCTGACCAGC 518960 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | || ||||| | || | |||| || ||| Sbjct 518959 AACGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGCACATTGTCCGACTACAACA 518900 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 518899 TTCAGAAGGAATCGACCCTTCACCTTGT 518872 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || || | |||||||| || || Sbjct 527958 CAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGA--GCCGAGTG 528015 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || |||||| || || || || || || || || ||||||| Sbjct 528016 ACTCGATAGAGAAAGTGAAGGCAAAGATACAAGAAAAGGAGGGCATACCACCAGACCAGC 528075 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||| | |||||||| || || ||| | || ||||| | || | |||| || ||| Sbjct 528076 AACGAATGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGCACATTGTCCGACTACAACA 528135 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 528136 TTCAGAAGGAATCGACCCTTCACCTTGT 528163 >seq4 Length=3027866 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||| ||||| || ||||| || ||| || Sbjct 343862 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 343803 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || |||||||| ||||| || || || || || ||||| || Sbjct 343802 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 343743 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || || | || |||||| | | | | ||||| || | Sbjct 343742 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 343683 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 343682 CAGAAGGAGTCAACCCTTCACCTTGT 343657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203624782638600