Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 159 4e-34 seq108 95.1 1e-14 >seq5 Length=4770536 Score = 159 bits (176), Expect = 4e-34 Identities = 510/784 (65%), Gaps = 14/784 (2%) Strand=Plus/Minus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || || || || || || |||||| || |||||||| Sbjct 3307579 GTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCG 3307520 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || || || ||||| | |||| | || || ||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAAT--TCGCATTCAATA 3307462 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 || || ||| | || || | ||| | |||| | | || | | || |||| Sbjct 3307461 CTGACTGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGT 3307402 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| ||||| || | || || |||| ||||| || |||||| Sbjct 3307401 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 3307342 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 ||| || | || ||||| || || ||||| | ||| || || | || || || Sbjct 3307341 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 3307282 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||||| || |||| | || ||||| | | || || ||||||| || Sbjct 3307281 CCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 3307222 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | ||| || |||||| | || |||| ||||| || | | || || |||| Sbjct 3307221 TTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 3307162 Query 17192 TCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATG 17248 | ||||| ||||| | | || | || || | || || | | || ||||| || Sbjct 3307161 TGAATGGCGTTAAACAGAAAGTCGCGTT---CTATCGGATCCTTGACGTAGGTATCAATC 3307105 Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || || |||||| || || || ||||| |||| || | || | ||| ||||| || Sbjct 3307104 AGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAA 3307045 Query 17309 CGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGA 17366 || || || | ||||| || || || || ||| | ||||||||| || |||| Sbjct 3307044 CGAGCCTCGGGAATTTGGACCTCGT--TACAAAAATTCAAAGTTAGATTTTCATTAACGA 3306987 Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG 17426 |||| || || || ||||| || ||||| | || | |||||| | ||| | Sbjct 3306986 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCAT 3306927 Query 17427 TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAAC 17486 ||||| |||||| | | ||| || | || ||| ||||| || ||||| ||| Sbjct 3306926 TAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAG 3306867 Query 17487 TAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACAT 17546 || || || || || || | | ||||||||||| |||||| ||||| | ||||| Sbjct 3306866 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 3306807 Query 17547 ATCT 17550 |||| Sbjct 3306806 ATCT 3306803 >seq108 Length=963028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009 |||||| || |||||||||||||||||||| ||||| ||||||||||||| || || || Sbjct 267918 CCATTCGAGGATTTTTTTAGCCCAGTACATCCGTAAAAATCCATGCATTTTGCCCTCTCG 267859 Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCA 120036 || || ||| |||| || |||||||| Sbjct 267858 AAGCAGTTGGCGTTGAGCCGCGTTCCA 267832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517509844068360