Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 176 5e-39 >seq5 Length=4770536 Score = 176 bits (194), Expect = 5e-39 Identities = 520/794 (65%), Gaps = 22/794 (3%) Strand=Plus/Minus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| ||||||| || || || || || || |||||| |||||||| Sbjct 3307585 CTTATCGTATCCCAGCTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACAT 3307526 Query 16066 TAAGTCGCAATTAATTCCTATAAG-TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTT 16124 |||| ||||| || || ||||| ||| || || || || | || | ||||| || Sbjct 3307525 TAAGCGACAATTCATGCCAATAAGATCG-ACAGGCAGGGCGTCCGTAAGAAATTCGCATT 3307467 Query 16125 CTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTA 16184 | || || || || | ||||| || | | |||| | || | | ||| | Sbjct 3307466 CAATACTGACTGCCTCCCTCATGATGTCATAAACCC---TTTCCGCCGTAGGCTTGTTCA 3307410 Query 16185 GG---TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAA 16241 |||||||| || || || || || || || || ||||| |||| ||||| | Sbjct 3307409 CAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCA 3307350 Query 16242 GTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAG 16301 | ||||| ||| || | || ||||| || || ||||| | |||||| || | || Sbjct 3307349 GCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAG 3307290 Query 16302 CAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGT 16361 ||||||| || |||||||||| || || | || || || || | | || ||||||| Sbjct 3307289 CAAATGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGT 3307230 Query 16362 ACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 ||| || | |||||| |||||| | | |||| ||||| || | | ||| Sbjct 3307229 ACGGTGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACG 3307170 Query 16422 CCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 || ||||| ||||| ||||||| | || | || | | || | | | || || Sbjct 3307169 GCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGAT--CCTTGACGTAGGT 3307112 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 ||||||||| | | |||||| || || || ||||| || | || | || | |||||| Sbjct 3307111 ATCAATCAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATA 3307052 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTCC--ACGTAAAATC---GTTCCGCCAGGTTC 16594 || || |||||||| | ||||| || || || ||| || ||| || || Sbjct 3307051 AAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTT-----AGATTT 3306997 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| ||||| || ||||| || || || || ||||| | | | |||||| | Sbjct 3306996 TCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGC 3306937 Query 16655 TCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 ||| || ||||| | | ||| || | | ||| || | || ||| ||||| || Sbjct 3306936 TCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACT 3306877 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGA 16774 ||||| || || || || || || || | | ||||||||||| |||||| ||||| Sbjct 3306876 GTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGC 3306817 Query 16775 AATACGACGTATCT 16788 | || ||| |||| Sbjct 3306816 ATCACAACGAATCT 3306803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511379067657640