Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 >seq5 Length=4770536 Score = 250 bits (276), Expect = 3e-61 Identities = 513/754 (68%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 24005 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 24064 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 24065 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 24120 ||| || || | || || || || | |||| | | || || |||||| | Sbjct 3307459 GACTGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATA--T 3307404 Query 24121 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 24180 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 3307403 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 3307344 Query 24181 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 24240 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 3307343 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 3307284 Query 24241 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG 24300 | ||||||||||| | ||||| | || || || || | || | || | || ||| Sbjct 3307283 AACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 3307226 Query 24301 CGC--TGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || | | || |||||| | | ||||||||||||||||| ||||| |||| Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 || | || || ||||| ||| ||| ||| | ||| || || || |||||||| Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAAT 3307106 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 || |||| ||||| || |||||||||||||| | || | ||| | ||| || ||||| Sbjct 3307105 CAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACA 3307046 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACT 24533 | |||||||| ||| || || || ||||||| ||| | || ||||||||| || Sbjct 3307045 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 3306988 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 3306987 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 3306928 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || Sbjct 3306927 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 3306868 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || || | || || || || | | ||| || ||||| ||||| || || | | ||| Sbjct 3306867 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 3306808 Query 24714 AATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 ||||| ||||| |||| || ||||||| Sbjct 3306807 AATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680581258960