Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq137 125 6e-24 seq122 104 2e-17 >seq137 Length=909340 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | || ||||||||||||||||||||||| | | Sbjct 668926 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 668985 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| ||| || |||||| | || || | ||||||||| || Sbjct 668986 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGA 669045 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | ||| || || | ||| ||| Sbjct 669046 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACC 669105 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 669106 TCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| | || || | | ||| Sbjct 668029 AGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCC 668088 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || ||| | || | | ||||||||| || | ||| |||||||| Sbjct 668089 TCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 668148 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | |||| |||||| |||| ||| |||||| Sbjct 668149 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTGATGGTC 668208 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||| |||||||| ||||| Sbjct 668209 TTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| | || || | | ||| Sbjct 667345 AGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCC 667404 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || ||| | || | | ||||||||| || | ||| |||||||| Sbjct 667405 TCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 667464 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | |||| |||||| |||| ||||| ||| Sbjct 667465 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 667524 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | |||||| |||||||||||||| Sbjct 667525 TTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| | || || | | ||| Sbjct 675511 AGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCC 675452 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || ||| | || | | |||||||| || | ||| |||||||| Sbjct 675451 TCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 675392 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | | |||| |||||| |||| ||||| ||| Sbjct 675391 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 675332 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | |||||| |||||||||||||| Sbjct 675331 TTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||||||||| ||||| | || ||| | | || |||| ||| || || Sbjct 657379 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCT 657438 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||| ||| || | ||| |||||||| |||||| ||| Sbjct 657439 GCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTC 657498 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||| ||||||| |||| || || || |||||||||| || Sbjct 657499 ACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTC 657558 Query 21159 TTGACAAATATTTGCATT 21176 || || || || |||||| Sbjct 657559 TTCACGAAGATCTGCATT 657576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||||||||||||||| || || | || || || | || Sbjct 668485 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 668544 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || || || ||| | || | | ||||||||| || | ||||||||| || Sbjct 668545 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 668604 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | ||| | ||| || ||| | || |||||| Sbjct 668605 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 668664 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || |||||||| || ||||| Sbjct 668665 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||||||||||||||| || || | || || || | || Sbjct 668713 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 668772 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || || || ||| | || | | ||||||||| || | ||||||||| || Sbjct 668773 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 668832 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | ||| | ||| || ||| | || |||||| Sbjct 668833 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 668892 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||||| || |||||||| || ||||| Sbjct 668893 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 >seq122 Length=888848 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 ||||| || ||||| || || |||||||| || || || || || ||||| | | || | Sbjct 494799 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 494858 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 ||| |||||||| ||||||| || |||||||| | | ||||| ||||||||||| Sbjct 494859 TGGGGATTAAAGTGGGCGCCAGCCGAGGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 494918 Query 23929 ACGTGAAAACCGTGC 23943 |||||||| |||||| Sbjct 494919 ACGTGAAAGCCGTGC 494933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422230756488332