Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 190 2e-43 seq137 123 3e-23 seq9 96.9 4e-15 >seq5 Length=4770536 Score = 190 bits (210), Expect = 2e-43 Identities = 383/563 (68%), Gaps = 4/563 (1%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 || ||||| | ||||| | | ||||| ||||||| || || ||| | ||||| Sbjct 3306794 AATCCCCGAAGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAG 3306853 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 || || | || || |||||||| || ||||| || || | | ||||| | ||| Sbjct 3306854 AAAGCGGTTGCCTCTTTCTGGACAGTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGAC 3306913 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| | | || || |||||| || ||||| | | || |||| || ||||| Sbjct 3306914 TGGGAAAGTCTTAATGATGGCGAGCGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCG 3306973 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||||| || |||||||| || || ||||| | ||| | | ||||| || | Sbjct 3306974 GCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTAACGAGGTCCAAATT 3307033 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 ||||||| || || || || || | || |||| |||| ||| | || || || ||| Sbjct 3307034 CCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCTGTGGAAAACATTCATTCTGAGATG 3307093 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAA-GCTCCGTT-TGTTGA 116951 || || || || || || ||||| | || || |||| || | || |||| | Sbjct 3307094 TACTCTCTTCTGATTGATACCTACGT-CAAGGATCCGAT-AGAACGCGACTTTCTGTTTA 3307151 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||||||| | ||| ||||||| || |||||||||| |||||||| | ||||| | Sbjct 3307152 ACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTG 3307211 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | |||| | | || ||||| |||||||| ||||| || |||| ||||| | Sbjct 3307212 CGAATAAAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATCGAAGGCGTAT 3307271 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 ||||||| || || || |||| || ||||||||||| || || |||||||| |||| Sbjct 3307272 TCTTTTCTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCC 3307331 Query 117132 TGACTTTCAGCAACGAGCTCATC 117154 | || || || |||||||| ||| Sbjct 3307332 TCACCTTTAGTAACGAGCTGATC 3307354 >seq137 Length=909340 Score = 123 bits (136), Expect = 3e-23 Identities = 169/233 (73%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745 ||||| ||||| || ||||| ||||| ||||| ||||||||| | || || || || Sbjct 668240 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCGAGT 668181 Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| || | |||| | |||| || || | ||||| ||||||||||| ||| Sbjct 668180 GACTCGATAGAG----AACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGG 668126 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| | |||| || || || ||| |||| || | ||||| | ||||| Sbjct 668125 ACCAGCAACGCTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACT 668066 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| ||||||||| | ||||| || | ||| |||| ||| | || ||| Sbjct 668065 ACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 668013 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || |||||| |||| || || | | Sbjct 667328 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCGAGT 667269 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || |||| | |||| ||| |||| ||||| |||||||| ||| | ||||| Sbjct 667268 GATTCGATTGAGAACG-TGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCA 667210 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| ||||| ||| |||| || | ||||| | ||||||||| Sbjct 667209 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 667150 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| |||||||| | || || || || ||| Sbjct 667149 CATTCAGAAGGAATCGACCCTTCACCTTGTG 667119 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| || || || || |||||| |||| || || | | Sbjct 667784 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 667725 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || || | | |||| || |||| ||||||||||| ||||| | ||||| Sbjct 667724 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 667666 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||| |||| || | ||||| || ||||||||| Sbjct 667665 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 667606 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | ||||| || || ||| | || || | || ||| Sbjct 667605 CATTCAGAAGGAGTCAACGCTTCACCTGGTGCTTCGTCTGCGTGGTGGC 667557 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || ||||| || || || | || || ||| ||| | Sbjct 669152 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 669093 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| |||||||| || |||||||| Sbjct 669092 GACACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 669033 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||||| || ||| |||| || | |||||||| ||||| ||| Sbjct 669032 CAACGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 668973 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || |||||| | || || || || ||| Sbjct 668972 ATTCAAAAGGAGTCAACCCTCCACCTTGTG 668943 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || || |||||| |||| || || | | Sbjct 675072 ATGCAGATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675131 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || || | | |||| || |||| ||||||||||| ||||| | ||||| Sbjct 675132 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 675190 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||| |||| || | ||||| || ||||||||| Sbjct 675191 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 675250 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | ||||| || | ||| |||| ||| | || || Sbjct 675251 CATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675298 Score = 109 bits (120), Expect = 6e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || |||||||| ||||| | || || || ||| Sbjct 657576 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 657517 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | |||| ||| |||| ||||| |||||||| || |||| || Sbjct 657516 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCA 657457 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || ||| |||| || | |||||| | |||||||| Sbjct 657456 GCAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 657397 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTGCAT 40926 ||| || |||||| |||| || || || ||| | || | | || ||| | |||||| Sbjct 657396 CATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGAGGCTGATTGCAT 657339 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| ||||| | || || || ||| Sbjct 658031 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657972 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| || |||| ||||| |||||||| || |||||||| Sbjct 657971 GACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 657912 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||| |||| || | |||||| | ||||||||| Sbjct 657911 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657852 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| |||| || ||||| || Sbjct 657851 ATCCAAAAGGAATCCACCCTTCATCTTGT 657823 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745 ||||||||||| || |||||||| || || || || || || | || || || || Sbjct 667556 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 667497 Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| || | |||| | |||| || || | ||||| ||||||||||| ||| Sbjct 667496 GACTCGATAGAG----AACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGG 667442 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| | |||| || || || ||| |||| || | ||||| | ||||| Sbjct 667441 ACCAGCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACT 667382 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||||||| | ||||| || | ||| |||| ||| | || || Sbjct 667381 ACAACATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 667330 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745 ||||||||||| || |||||||| || || || || || || | || || || || Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| || | |||| | |||| || || | ||||| ||||||||||| | | Sbjct 675360 GACTCGATAGAG----AACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAG 675414 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| | |||| || || || ||| |||| || | ||||| | ||||| Sbjct 675415 ACCAGCAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACT 675474 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||||||| | ||||| || | ||| |||| ||| | || || Sbjct 675475 ACAACATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 675526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || |||||| |||| || || | | Sbjct 675528 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675587 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||| ||| || | ||||| |||||||| || | ||||| Sbjct 675588 GACTCGATAGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 675647 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| || ||||| ||| |||| || | ||||| | |||||||||| Sbjct 675648 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 675707 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || || || || ||| Sbjct 675708 ATTCAGAAGGAATCGACCCTTCACCTTGTG 675737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || ||||| || || || || || || | || || ||| | | | Sbjct 668012 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 667953 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| || || ||||| || || | || ||| Sbjct 667952 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 667893 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||| |||| || | ||||| | ||||||||| Sbjct 667892 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTTTATCTGACTACAAC 667833 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || || ||||| ||| Sbjct 667832 ATTCAGAAGGAATCGACCCTCCATCTCGTG 667803 >seq9 Length=3474131 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 || || ||||||||| || || || || ||||| || |||||||| ||| | || || || Sbjct 2738253 CCAAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA 2738312 Query 40743 AGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | | || | | | |||| | || | |||||| | ||||||||||| || || Sbjct 2738313 GCCAAGTGATTCCATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACCAC 2738371 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | || || ||||| || |||| ||| || || ||| |||| |||| ||| || ||| | Sbjct 2738372 CAGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTG 2738431 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | || || || || |||||| | || || ||||| || Sbjct 2738432 ATTATAATATTCAAAAGGAGTCGACACTCCATCTTGT 2738468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515183604793520