Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 138 2e-27 seq137 100 4e-16 seq383 98.7 1e-15 >seq9 Length=3474131 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| ||||| | ||| |||| ||| Sbjct 2738259 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 2738318 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| || ||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 2738319 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 2738378 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| ||||||| || || || || || || ||||| | || || | |||||||| Sbjct 2738379 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCTGATTATAA 2738438 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAA 124771 ||||||||| || || || | ||| | ||| || | ||||||| || || || Sbjct 2738439 TATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAA 2738492 >seq137 Length=909340 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || || || || ||||| || | || | ||| | | Sbjct 668012 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 667953 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || ||||| ||||| || ||||| || |||||||| Sbjct 667952 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 667893 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| || || || || |||||| |||| || ||| || || || Sbjct 667892 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTTTATCTGACTACAAC 667833 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | ||| | || | ||| | || |||||||| Sbjct 667832 ATTCAGAAGGAATCGACCCTCCATCTCGTGCTTCGTCTGCGTGGTGGTAT 667783 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || || || || || || || | ||| | || | | | Sbjct 667556 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 667497 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || || | || ||| || || || || || || || ||||| || || Sbjct 667496 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 667437 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | || ||||||||||| || || |||||| |||| || || || || || Sbjct 667436 CAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 667377 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || ||||| | || ||||| | ||||| || |||||||| Sbjct 667376 ATTCAGAAGGAGTCAACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGTAT 667327 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| ||||| |||||||| || || | ||| | || | | Sbjct 657576 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 657517 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | || ||| | || || |||||||| || || || || ||||| ||||| Sbjct 657516 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCGGATCA 657457 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||||||||| || || || ||| |||| || || || || || Sbjct 657456 GCAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 657397 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||||| || || || Sbjct 657396 CATTCAAAAGGAGTCCAC 657379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || |||||||| || || | ||| | || | | | Sbjct 658031 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657972 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| | || ||| ||||| || || || || || ||||| || || Sbjct 657971 GACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 657912 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||||||||| || || || ||| |||| || || || || || Sbjct 657911 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657852 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | ||| | || | ||| | |||||||| || Sbjct 657851 ATCCAAAAGGAATCCACCCTTCATCTTGTACTCCGTCTTCGAGGTGGAAT 657802 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || || || || || || || | ||| | || | | | Sbjct 675300 ATGCAAATATTTGTGAAAACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 675359 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || || | || ||| || || || || || || || ||||| || || Sbjct 675360 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 675419 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || | || ||||||||||| || || |||||| |||| || || || || || Sbjct 675420 CAACGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 675479 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || ||||| | ||||| || |||||||| Sbjct 675480 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGTAT 675529 >seq383 Length=735259 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||||||||| ||| | ||| | || | Sbjct 365711 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 365770 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || |||||||| || || || || ||||| || ||| Sbjct 365771 GATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAA 365830 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || ||||| |||||| | || | ||| ||||| ||| Sbjct 365831 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 365890 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| || || ||||| Sbjct 365891 ATTCAGAAGGAGTCAAC 365907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755403807433600