Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 132 4e-26 >seq5 Length=4770536 Score = 132 bits (146), Expect = 4e-26 Identities = 387/596 (65%), Gaps = 0/596 (0%) Strand=Plus/Minus Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 |||||||| || | || |||||||| || | ||||| || | ||| || | |||| Sbjct 3307404 TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCG 3307345 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || ||| || || || ||||| || || || || || | ||| || || | |||||| Sbjct 3307344 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAT 3307285 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 |||||||||||||||| ||||| | || || || || |||| ||||| |||||| | Sbjct 3307284 GAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT 3307225 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 |||||| | | ||||| | ||||||| || || | |||||| || Sbjct 3307224 GCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 3307165 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 | | || || ||||| | | | | |||| | ||| | || ||||| || Sbjct 3307164 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATC 3307105 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | | ||||| || |||||||| || |||| || | || | |||||||| || Sbjct 3307104 AGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAA 3307045 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | ||| |||| ||||| || || |||| | | || ||||| ||||| || Sbjct 3307044 CGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATG 3306985 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA 16699 ||||| || || || || || || | | | ||| || | ||| ||| | Sbjct 3306984 CCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTA 3306925 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 || || |||||||| | ||| || | |||||| || || || || ||||| ||||| Sbjct 3306924 AGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAG 3306865 Query 16760 GCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815 ||||| || || || || | | ||| || || | ||| || || | |||||| Sbjct 3306864 GCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 3306809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462480046202200