Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq137 127 2e-24 >seq137 Length=909340 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| | Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || |||| || ||||| || || |||||||| || ||||| || || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | ||| | ||||||| Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| ||||| || ||||| || |||||||| ||||||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| | Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || |||| || ||||| || || |||||||| || ||||| || || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | ||| | ||||||| Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || ||||| || |||||||| |||||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || |||| ||||| || || || ||||| ||||| ||||| || || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| ||||| ||| || ||| || | | | || | | ||| ||| Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 675119 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || ||||| || || || |||||||||||||| |||||| || Sbjct 675118 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATGATG 675068 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| |||||||||||||||||||||| || |||| | || ||| Sbjct 667576 ACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 667635 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || ||||| ||||| ||||| || || | |||||| ||||| | Sbjct 667636 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 667695 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | || | | ||| ||||| | ||| || ||||| Sbjct 667696 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 667755 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||||||||| Sbjct 667756 CCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | ||| | | |||||||| ||||| |||||||||||||||||||||| Sbjct 668013 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 668072 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || |||| || ||||| || || ||||| || || ||||| || || Sbjct 668073 CAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGG 668132 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | ||| | |||||| Sbjct 668133 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCAC 668192 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| || || || || ||||| || ||||| Sbjct 668193 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| || | |||| | || |||| || || || || || Sbjct 675718 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCAAAG 675659 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || |||||||| ||||| | |||||||||||| || ||| ||| || | Sbjct 675658 ATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTC 675599 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||| | | ||| ||||| | ||| || ||||| || ||||| |||||||| Sbjct 675598 TCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 675539 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 675538 AAGATCTGCAT 675528 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| || | |||| | || |||| || || || ||||| Sbjct 667138 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 667197 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || |||||||| || || | ||||||||||| ||| ||| ||| || | Sbjct 667198 ATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTC 667257 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | || | ||| ||||| | ||| || ||||| || ||||| |||||||| Sbjct 667258 TCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 667317 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 667318 AAGATCTGCAT 667328 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||| | | | | |||| | || |||| || || || || || Sbjct 667822 TCCTTCTGAATGTTGTAGTCAGATAAAGT-GCGACCATCCTCCAACTGCTTGCCAGCAAA 667880 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| || || || || | ||||||||| ||| ||| || ||| || Sbjct 667881 GATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATT 667940 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | | ||||| |||| ||||| ||||| || ||||| |||||||| Sbjct 667941 CTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCAC 668000 Query 45325 AAAGATTTGCATG 45337 || ||||||||| Sbjct 668001 GAATATTTGCATG 668013 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| |||||||||||||| || |||| | || |||| || Sbjct 657372 GTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTG 657431 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || |||| || || || || || || | ||||||||||| ||| || Sbjct 657432 CTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 657491 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | ||| | ||||||||||| || || || ||||| || Sbjct 657492 TGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 657551 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||| ||||| Sbjct 657552 TAGAGTCTTCACGAAGATCTGCAT 657575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || ||||||||||| || |||| | || |||| || ||||| || || Sbjct 657841 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAG 657900 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | |||||||||||| ||| || ||| || | Sbjct 657901 ATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 657960 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||| | ||||||||||| || || || ||||| |||| ||||||||| Sbjct 657961 TCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACG 658020 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 658021 AAGATTTGCAT 658031 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||| ||||| ||| |||| | || |||| || || || || || Sbjct 668961 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 669020 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | ||||||||||| ||| || ||| || Sbjct 669021 GATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 669080 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| ||||| |||||||| || ||||| ||||| Sbjct 669081 CTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCAC 669140 Query 45325 AAAGATTTGCAT 45336 ||| |||||||| Sbjct 669141 AAAAATTTGCAT 669152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395048587611067