Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 >seq5 Length=4770536 Score = 181 bits (200), Expect = 1e-40 Identities = 509/770 (66%), Gaps = 16/770 (2%) Strand=Plus/Minus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 |||| || || |||| |||| ||||| ||| ||||||| ||||||||| || || Sbjct 3307563 AGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 3307504 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 3307503 AGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACTGACTGCCTCCCTCATG 3307444 Query 14150 ATAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 14205 || || |||| | || | | ||| | || | | ||||||||||| | || Sbjct 3307443 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGTTTAAAAATGAGGCA 3307388 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 |||||||| || ||||| ||||||| ||| || || ||||| ||| || | || Sbjct 3307387 TGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCC 3307328 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | || || || || | ||| || || | ||| ||||| || |||||||||| Sbjct 3307327 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATAC 3307268 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 || || | ||||| ||||| | | || || | ||| ||| ||||| |||| || Sbjct 3307267 GCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCAAT 3307208 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||| | ||||| || | || || || | | || |||| ||| || ||||| Sbjct 3307207 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 3307148 Query 14446 TA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14502 | || || | |||| | | |||| | ||| |||||||| || ||| | ||||| Sbjct 3307147 CAGAAAGTCGCGTTCTATCGGATCCTTG--ACGTAGGTATCAATCAG-AAGAGAGTACAT 3307091 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 ||||| || |||||||||| ||| | || | ||||||||||| | ||| || | Sbjct 3307090 CTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 3307031 Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| ||||| | | ||||| | | | |||||||||||| || |||||||| || | Sbjct 3307030 TTGGACCTCGTTACAAAAAT-TCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCG 3306972 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 | || || ||||| | | ||| |||| |||| ||| | || ||| ||| | Sbjct 3306971 CGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGT 3306912 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | | | |||||| | | ||| ||||| ||||||||||| ||| ||||| ||||| | Sbjct 3306911 CAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCT 3306852 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 | || | |||| || || | ||| || || | || || |||||| Sbjct 3306851 TGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTT 3306802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482312275948360