Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 226 3e-54 seq137 105 6e-18 >seq8 Length=2505178 Score = 226 bits (250), Expect = 3e-54 Identities = 376/538 (70%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || |||| || ||||| || ||||| || ||| ||| || || || ||||| Sbjct 602913 TCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGA 602854 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | || || ||| |||||||| || |||| ||| | || || |||| |||||| Sbjct 602853 ATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCAT 602794 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || ||||| || | |||||| || || |||| || ||||||||||||||||| ||||| Sbjct 602793 GGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACATAACGA 602734 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||| ||||| | || | |||||||| || ||||| |||||| | || || Sbjct 602733 GCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCA 602674 Query 23582 GCCACACTCGAACCTTTTGC-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || | | |||| ||| | | |||||| | || ||| || || || | Sbjct 602673 GCGATAAACGTA-TTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGCT 602615 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 |||||| |||| || |||||||| || ||||| || || |||||||| ||||| ||||| Sbjct 602614 TTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTT 602555 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | ||| ||||| ||||| || | | ||||| | || || || || Sbjct 602554 CATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGT 602495 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 || |||||| | || | | ||| |||||||||||||| || || || || || | Sbjct 602494 GGGTGAGGCGTGAATCAACCA-CTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGT 602436 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 | | || || || || ||||| || | ||||||||| | |||||| ||||| ||||| Sbjct 602435 CCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 602378 >seq137 Length=909340 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| ||||| || Sbjct 675528 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 675587 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || || ||| | ||||||||| ||| | || || ||||| Sbjct 675588 GACTCGATAGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCTCCAGACCA 675646 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || || |||||||| ||||||||||| | || || ||| || || Sbjct 675647 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 675706 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 |||||| || |||||||| ||||| || || ||| | || | |||||| || Sbjct 675707 CATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTTCGTGGCGGTTGA 675758 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| ||||| ||| Sbjct 667328 ATGCAGATCTTCGTGAAGACGCTGACTGGGAAGACTATCACCCTCGAGGTTGAGCCGAGT 667269 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | || | || || || ||| | | ||||||| ||| | || || ||||| Sbjct 667268 GATTCGATTGAGAACGTGAAGGCAAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 667210 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || ||||||||||| ||||||||||| | || || ||| || || Sbjct 667209 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 667150 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || |||||||| ||||| || || ||| Sbjct 667149 CATTCAGAAGGAATCGACCCTTCACCTTGTGCTT 667116 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| |||||||| ||||| | || || || || Sbjct 658031 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 657972 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || || || ||||||||| ||| | || || |||||| Sbjct 657971 GACTCGATAGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 657912 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||||||||||| | || || || || ||| Sbjct 657911 CAACGCCTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 657852 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || |||||||| ||||| Sbjct 657851 ATCCAAAAGGAATCCACCCTTCATCTTGTACT 657820 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/237 (70%), Gaps = 14/237 (6%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| || ||||| || || || | || |||||||| Sbjct 668469 CATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACTATAACGCTAGAAGTTGAACC--- 668413 Query 31252 CGACAGTG--TCGA-----AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 ||||| |||| |||| | || || || || ||||| ||| | |||| Sbjct 668412 ---CAGTGATTCGATTGAGAACG-TAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGC 668357 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || |||||| | || |||||||| || |||||||||||| | ||| | | Sbjct 668356 CAGATCAACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTG 668297 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| |||||||| || || || || |||||||| || ||| |||| | || |||| Sbjct 668296 ATTACAACATTCAGAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTA 668240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || ||||| || || || | || || ||||| | Sbjct 669152 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 669093 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||| ||| | || || |||||| Sbjct 669092 GACACAATCGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 669033 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || ||||| || || || || ||||||||||| | || || || |||||| Sbjct 669032 CAACGCCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 668973 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || || || || || || |||| Sbjct 668972 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACT 668935 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || |||||| |||| ||||| || Sbjct 667784 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 667725 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | || | || || | || ||||| || || | || || |||||| Sbjct 667724 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAG 667665 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||||||||||||||| | ||| | ||| || ||| Sbjct 667664 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 667605 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| ||||| ||| | ||| | || || Sbjct 667604 ATTCAGAAGGAGTCAACGCTTCACCTGGTGCTTCGTCTGCGTGGTGG 667558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735603113840