Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 273 3e-68 seq8 196 6e-45 >seq5 Length=4770536 Score = 273 bits (302), Expect = 3e-68 Identities = 444/636 (70%), Gaps = 11/636 (2%) Strand=Plus/Minus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 ||||||||| || | ||||| ||||| ||| || || || |||| ||| || | || Sbjct 3307405 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 3307346 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 |||| ||| ||||| || ||||| || |||||||| || ||||| || |||||||| || Sbjct 3307345 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 3307286 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 ||| || |||||||| | ||||| | ||||| || || | || | ||| | || | Sbjct 3307285 TGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTA--C 3307228 Query 33746 GGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || || | | | |||||| | | ||||||||||||||||| ||||| ||| Sbjct 3307227 GGTGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGC 3307168 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 | ||||| ||||| ||||| ||| ||| ||| | ||| || || || ||||| Sbjct 3307167 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCA 3307108 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 |||| |||| ||||| || |||||||||||||| | || | || | ||| || ||| Sbjct 3307107 ATCAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAA 3307048 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCA 33978 || | |||||||| ||| || || || ||||||| ||| | || ||||||||| | Sbjct 3307047 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAA--TTCAAAGTTAGATTTTCATTAA 3306990 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 34038 | || ||||||||||| || || || ||||| |||| || || | ||| | Sbjct 3306989 CGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCAT 3306930 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| | Sbjct 3306929 CATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 3306870 Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAA 34158 | || || | || || || || | | ||| || ||||| |||||||| || | | || Sbjct 3306869 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 3306810 Query 34159 CAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 | ||||| ||||| || |||| |||||||||| Sbjct 3306809 CGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 196 bits (216), Expect = 6e-45 Identities = 373/545 (68%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | | Sbjct 602910 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATT 602851 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 602850 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 602791 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || ||||| | | || || |||||||| || |||||||| | || | |||| Sbjct 602790 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACATAACGAGCG 602731 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||| | || | || | | ||| || | || ||| || || ||||| || || | | Sbjct 602730 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCG 602671 Query 63507 ATATAGCCTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 ||| | | | || || || || | | ||||| |||| || || || || || Sbjct 602670 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGCTT 602614 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 || ||||| | ||| ||| |||| | ||||||||| || || || || || || || || Sbjct 602613 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 602554 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 || |||| | ||||||||| ||||| || | || || || |||||||| | || Sbjct 602553 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 602494 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 || || ||||| | ||||| |||||||| | ||||||||| ||||||||||| | ||| Sbjct 602493 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 602434 Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || | Sbjct 602433 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAA 602374 Query 63804 ATTTT 63808 ||||| Sbjct 602373 ATTTT 602369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629774087476560