Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 156 4e-33 seq8 120 3e-22 >seq5 Length=4770536 Score = 156 bits (172), Expect = 4e-33 Identities = 502/775 (65%), Gaps = 17/775 (2%) Strand=Plus/Minus Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| || | || || || || ||||| |||||||||| ||||||| | ||||||||| Sbjct 3307570 CTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCAT 3307511 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || |||||||| || || | || | || | ||| || ||| ||| | || || || Sbjct 3307510 GCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACTGACTGCCTC 3307451 Query 11569 AATGATTATCGACGTTATAA---CTT----CCTTAGATGGTGGATGTAATAAATGTTTAA 11621 | || || || |||| ||| || ||| | | | | | | |||||||| Sbjct 3307450 CCTCATGAT----GTCATAAACCCTTTCCGCCGTAG--GCTTGTTCACA-ATATGTTTAA 3307398 Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 | || | || |||||||| || | ||||| |||| ||| || || || ||| || Sbjct 3307397 AAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAA 3307338 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 | || | || ||||| | || || || || | ||| || || | |||||||||||||| Sbjct 3307337 AGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAG 3307278 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGT 11798 ||||||||| || || | ||| || || || || | | || | || | |||| | Sbjct 3307277 AAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTT 3307218 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 | | | ||||| | |||||||| || ||||| || || || |||| | Sbjct 3307217 TATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAA 3307158 Query 11859 TAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | |||||||| | | |||||| ||| | || || ||||| || | | | Sbjct 3307157 TGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAGAAGAG 3307098 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 ||||| || |||||||| ||||||| ||| | ||| | |||||| ||||| || |||| Sbjct 3307097 AGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCT 3307038 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | | || || || | |||| | | || ||| ||||| || || ||||||| Sbjct 3307037 CGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCAC 3306978 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | | || || || || | | || || |||| ||| | | | | | | | Sbjct 3306977 TGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTT 3306918 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| ||| | ||| || | |||||| ||||| ||||| ||||| ||| || || | Sbjct 3306917 CCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCG 3306858 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || || | | ||| |||||||| || | || || | | |||||| || Sbjct 3306857 CTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 3306803 >seq8 Length=2505178 Score = 120 bits (132), Expect = 3e-22 Identities = 273/409 (67%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||||||||| | ||| || | | || || |||| ||| | || ||||||| | | Sbjct 602799 TGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACA 602740 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | ||| | || | | | | ||| ||||| | |||||| || | || || Sbjct 602739 TAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTA 602680 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305 | || | ||| | ||| ||| ||| || | | || || | || || |||| Sbjct 602679 GTTCCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGA--CCGATCCCAC 602622 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | || ||| || || | || |||||||| | ||| ||| ||||||| || ||||||| Sbjct 602621 CCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGT 602562 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | || || |||| || | |||||| || ||||| ||||| | || || || || |||| Sbjct 602561 CGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAA 602502 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || || || || ||||| ||||| |||| ||| || || || || Sbjct 602501 AAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAG 602442 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534 || | || | ||| | || |||||||||| || || | ||| | ||| Sbjct 602441 CAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 602393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468492430792880