Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 246 4e-60 seq8 199 5e-46 >seq5 Length=4770536 Score = 246 bits (272), Expect = 4e-60 Identities = 492/722 (68%), Gaps = 13/722 (2%) Strand=Plus/Minus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGG--TGGATACAATAAATG 36144 ||| || || | || || ||| || |||| | | || || |||||| || Sbjct 3307459 GACTGCCTCCCTCATGATGTCATAA-ACCCTTTCCGCCGTAGGCTTGTTCACAATA--TG 3307403 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| ||||| ||| || || || |||| ||| || | ||||| Sbjct 3307402 TTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTT 3307343 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 3307342 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGA 3307283 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||| | ||||| | || || || || | || | ||| | || || Sbjct 3307282 ACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGC 3307223 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | | || |||||| | | ||||||||||||||||| ||||| |||| || Sbjct 3307222 CTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 3307163 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 | || || ||||| ||| ||| ||| | ||| || || || |||||||||| Sbjct 3307162 TTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAG 3307103 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 |||| ||||| || |||||||||||||| | || | ||| | ||| || ||||| | Sbjct 3307102 AAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACG 3307043 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 36559 |||||||| ||| || || || ||||||| ||| | || ||||||||| || || Sbjct 3307042 AGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATG 3306985 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || |||||||| || || || ||||| |||| || || | ||| | Sbjct 3306984 CCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTA 3306925 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || || Sbjct 3306924 AGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAG 3306865 Query 36680 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || | || || || || | | ||| || ||||| ||||| || || | | ||| ||| Sbjct 3306864 GCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAAT 3306805 Query 36740 CT 36741 || Sbjct 3306804 CT 3306803 >seq8 Length=2505178 Score = 199 bits (220), Expect = 5e-46 Identities = 418/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 66039 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 602989 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 602931 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 602930 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 602871 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | ||| | | | | ||| || || || ||||| | || | ||| || Sbjct 602870 AGAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 602811 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | ||| |||||| ||||| | || ||||| | | || || |||||||| || | Sbjct 602810 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGC 602751 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 ||||||| | || | ||||||| | || | || | | ||| || | || |||||||| Sbjct 602750 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 602691 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA-CGAAT--ATTACTAATTGATA 66336 | ||||| || || | |||| | | | ||||| || || | | ||||| Sbjct 602690 ACTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 602634 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || | Sbjct 602633 GACCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 602574 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 |||| ||||| || || |||| |||| | ||||||||| ||||| || | | | Sbjct 602573 CCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCG 602514 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 602513 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 602454 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 602453 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 602394 Query 66577 TGTGCTGAGGTCTTTC 66592 ||| |||||| || || Sbjct 602393 TGTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127328486680