Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 273 3e-68 seq8 196 7e-45 >seq5 Length=4770536 Score = 273 bits (302), Expect = 3e-68 Identities = 511/748 (68%), Gaps = 7/748 (1%) Strand=Plus/Minus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949 || || || | || || ||| |||| | | || | || | |||||| Sbjct 3307459 GACTGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGTTT 3307400 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 ||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 3307399 AAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACT 3307340 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| || Sbjct 3307339 AAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACC 3307280 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 ||||||||| | ||||| | || || || || || || | ||| | || || | Sbjct 3307279 AGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTT 3307220 Query 50130 GTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | || |||||| | | ||||||||||||||||| ||||| |||| ||||| Sbjct 3307219 TTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTG 3307160 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 ||||| ||||| ||| ||| ||| | ||| || || || ||||| |||| ||| Sbjct 3307159 AATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAGAAG 3307100 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 | ||||| || |||||||||||||| | || | || | ||| || ||||| | ||| Sbjct 3307099 AGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGC 3307040 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTCCG 50364 ||||| ||| || || || ||||||| ||| || || ||||||||| || || || Sbjct 3307039 CTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCA 3306982 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 |||||||| || || || ||||| |||| || || || ||| | || Sbjct 3306981 TCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGA 3306922 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || || || Sbjct 3306921 CTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCA 3306862 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 | || || || || | | ||| || ||||| |||||||| || | | ||| ||||| Sbjct 3306861 ACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCTT 3306802 Query 50545 TTTGGATTTGGTGCAAGGATCGGTTCCA 50572 ||||| || |||| || ||||||| Sbjct 3306801 CGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 196 bits (216), Expect = 7e-45 Identities = 415/615 (67%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || |||||| || | | || || || || | || ||| || | Sbjct 602989 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 602930 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 |||| | | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 602929 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 602870 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | || || || || ||||| | || | ||| || Sbjct 602869 GAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 602810 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | |||||| ||||| | || ||||| | | || ||||||||||| || || Sbjct 602809 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCC 602750 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 602749 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 602690 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 80216 ||||| || || | |||| | | | || || || || | | ||||| | Sbjct 602689 CTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 602633 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 602632 ACCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 602573 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| || || || || |||| |||| | ||||||||| ||||| || | | || Sbjct 602572 CTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGT 602513 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || |||||||| | || || || ||||| | ||||| |||||||||| ||||||||| Sbjct 602512 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 602453 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||||||||| | || | ||| |||||| |||| | ||| ||||| ||||| Sbjct 602452 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 602393 Query 80457 GTGCTGAGGTCTTTC 80471 || |||||| || || Sbjct 602392 GTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718219176604280