Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 172 5e-38 >seq5 Length=4770536 Score = 172 bits (190), Expect = 5e-38 Identities = 476/723 (66%), Gaps = 14/723 (2%) Strand=Plus/Minus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 |||| || || |||| ||| ||||| ||| ||||||| ||||||||| || || Sbjct 3307563 AGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 3307504 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 3307503 AGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACTGACTGCCTCCCTCATG 3307444 Query 13818 ATAATTGTAATAATCTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 13873 || || |||| | | || | | ||| | || | | ||||||||||| | || Sbjct 3307443 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGTTTAAAAATGAGGCA 3307388 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||||| || ||||| ||||||| ||| || || ||||| ||| || | || Sbjct 3307387 TGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCC 3307328 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | || || || || | ||| || || | ||||||||| || |||||||||| Sbjct 3307327 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATAC 3307268 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 || || | ||||| ||||| | | || || | ||| ||| ||||| |||| || Sbjct 3307267 GCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCAAT 3307208 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | ||||| || | || || || | | || |||| ||| || ||||| Sbjct 3307207 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 3307148 Query 14114 TAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14170 | | | | | |||| | | |||| | ||| |||||||| || ||| | ||||| Sbjct 3307147 CAGAAAGTCGCGTTCTATCGGATCCTTG--ACGTAGGTATCAATCAG-AAGAGAGTACAT 3307091 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| || |||||||||| ||| | || | |||||||| || | ||| || | Sbjct 3307090 CTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 3307031 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| || || |||| | | | |||||||||||| || |||||||| || || Sbjct 3307030 TTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGC 3306971 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || ||||| | | ||| |||| |||| ||| || || ||| ||| || Sbjct 3306970 GAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTC 3306911 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | | |||||| | | ||| ||||| ||||||||||| ||| || || ||||| || Sbjct 3306910 AGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTT 3306851 Query 14411 ATA 14413 || Sbjct 3306850 GTA 3306848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694856791800