Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=4770536 Score = 158 bits (174), Expect = 1e-33 Identities = 403/607 (66%), Gaps = 6/607 (1%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 |||||||||||| | || |||||||| || ||||| ||||||| ||| || || || Sbjct 3307405 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 3307346 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| ||| || | || ||||| | || || || || | ||| || || | ||| || Sbjct 3307345 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 3307286 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||||| || || | ||||| ||||| | || || || | ||| Sbjct 3307285 TGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 3307226 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 ||| ||||| || | ||||| | ||||| || | || || || | | || Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 13884 TGTTTCGATTGCATTGAATA-AATGTTCC-TTCTCTTTAGTACTTGAAATGTATGTATCA 13941 |||| || || || || | || || | |||| | | ||||| ||| |||||| Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGAC--GTAGGTATCA 3307108 Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||| | ||||| ||||| || |||||||| | ||| | || | |||||||| Sbjct 3307107 ATCAG-AAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAA 3307049 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||| || | ||| ||||| |||| | | | ||||||||||| Sbjct 3307048 ACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 3306989 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 || |||||||| || || || || ||||| | | ||| |||| |||| ||| Sbjct 3306988 GATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATC 3306929 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||| ||| || | | |||||| | | ||| ||||| ||||||||||| || Sbjct 3306928 ATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 3306869 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 | || || ||||| || || | |||| || || | ||| || || | || || Sbjct 3306868 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 3306809 Query 14241 AAATCTT 14247 |||||| Sbjct 3306808 GAATCTT 3306802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555735496280