Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 255 8e-63 seq8 192 8e-44 >seq5 Length=4770536 Score = 255 bits (282), Expect = 8e-63 Identities = 514/753 (68%), Gaps = 17/753 (2%) Strand=Plus/Minus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 42050 ||| || || | || || || || | |||| | | || || |||||| | Sbjct 3307459 GACTGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATA--T 3307404 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 ||||||| || | ||||| ||||| ||| || || ||||||| ||| || | |||| Sbjct 3307403 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 3307344 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 | ||| ||||| || ||||| || |||||||| || ||||| || || || ||||||| Sbjct 3307343 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 3307284 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||||||||| | ||||| | || || || || | || | ||| | || | Sbjct 3307283 AACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTG 3307224 Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | | || |||||| | | ||||||||||||||||| ||||| |||| || Sbjct 3307223 CCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 3307164 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA 42347 ||| ||||| ||||| ||| ||| ||| | ||| || || || ||||| |||| Sbjct 3307163 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCA 3307104 Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 |||| ||||| || |||||||||||||| | || | || | ||| || ||||| | Sbjct 3307103 GAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAAC 3307044 Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACTAT 42465 ||||||| || || || || ||||||| ||| || || |||||| || || || Sbjct 3307043 GAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 3306986 Query 42466 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 || |||||||| || || || ||||| |||| || || | ||| || | Sbjct 3306985 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCG-CCATCAT 3306927 Query 42526 TAA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 ||| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || | Sbjct 3306926 TAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAG 3306867 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 | || | || || || || | | ||| |||||||| ||||| || || | | ||| | Sbjct 3306866 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 3306807 Query 42645 ATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677 |||| ||||| || |||| || ||||||| Sbjct 3306806 ATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 192 bits (212), Expect = 8e-44 Identities = 367/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | Sbjct 602910 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATT 602851 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 602850 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 602791 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || ||||| | | || || |||||||| || |||||||| | || | |||| Sbjct 602790 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCCCTGATCGACATAACGAGCG 602731 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||| | || | || | | ||| || | || ||||||||| | ||||| || || | | Sbjct 602730 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCG 602671 Query 72262 ATATAGCTTCCACTGGCA-CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||| | | | || || || || | || ||||| |||| || || || || || Sbjct 602670 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGCTT 602614 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || || || Sbjct 602613 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 602554 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || |||| | ||||||||| ||||| || | | || || |||||||| | || Sbjct 602553 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 602494 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||| | ||||| |||||||||| ||||||||| ||||||||||| | || Sbjct 602493 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 602434 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 | ||| ||| || |||| | ||| ||||| ||||| | |||||| || || Sbjct 602433 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671092832670520