Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 seq8 86.0 9e-12 >seq5 Length=4770536 Score = 174 bits (192), Expect = 2e-38 Identities = 389/577 (67%), Gaps = 13/577 (2%) Strand=Plus/Plus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| || ||||| |||||||| | ||||| || || ||||| || ||||| Sbjct 3306818 CCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACA 3306877 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || || ||| | | ||||| || || ||||| | || | | ||| Sbjct 3306878 GTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTT---AATGATGGC 3306934 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 ||||| | || || ||| | | ||||| ||||| || | | ||||| ||||| || Sbjct 3306935 GAGCGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAAT 3306994 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || ||||| |||| || | | | ||| | ||||| |||| |||| | || Sbjct 3306995 GAAAATCTAACTTTGAAT---TTTTGTAACGAGGTCCAAATTCCCGAGGC-TCGTTGTTT 3307050 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| ||| | ||| || | || ||| | || || || ||||||||| |||||||| Sbjct 3307051 TTATGGAATGCAAGTCGCTGTGGAAAACATTCATTCTGAGATGTACTCTCTTCTGATTGA 3307110 Query 125297 CATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGC 125355 | ||| | |||||| | | | | || | || |||||||| || | ||| ||| Sbjct 3307111 TACCTACGTCAAGGATCCGATA-GAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGC 3307169 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 ||| | | ||| ||||| | |||| | || ||||||| | | | ||| | ||| Sbjct 3307170 CGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCGAATAAAAAGGCACCGT 3307229 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 |||| || | |||||||| ||||| || | || ||| | |||||||| ||| |||| Sbjct 3307230 ACGCGGAGCGTCTGGTGGCGTTCGCTGCTATCGAAGGCGTATTCTTTTCTGGTTCATTTG 3307289 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | ||||||| |||||||||||||| || |||||||| || || || ||||||||| Sbjct 3307290 CTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGC 3307349 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || |||||| || ||||| ||| || ||||| Sbjct 3307350 TGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGC 3307386 >seq8 Length=2505178 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| ||||| || || || | ||| |||| | ||||| ||||| |||| Sbjct 602747 CAGGGCGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCATCCGGAT 602806 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || | | ||| | ||| | || || ||| ||||| |||||| || || |||| Sbjct 602807 GTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAAATTCGCGCTCGGGAT 602866 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||| ||| | || ||| | ||||||||||| || | | ||| | | Sbjct 602867 CTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAGGCAGGTAGTTCG 602926 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| | | ||| |||| | || |||||||| | || || ||||| || ||||| Sbjct 602927 TGGACCTTTATGGACCCCCATGAGTGCCCCGGTCTTGCTGACTGTTGGGGGGAGGAGTTC 602986 Query 97116 GA 97117 || Sbjct 602987 GA 602988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741008002072520