Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 113 3e-20 seq137 111 1e-19 >seq9 Length=3474131 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | ||||| ||| | ||| || || || || ||||| || || ||||| Sbjct 2738488 TGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAG 2738429 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | |||| || || || || || ||| | || | |||||||| || || Sbjct 2738428 AGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTG 2738369 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | ||||| |||||||| ||||| ||| ||||| | || |||| ||| || || Sbjct 2738368 GTATTCCCTCTTTGTCTTGGATTTTTGCT-TTTACGTTCTCAATGGAATCACTTGGCTCA 2738310 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTG 15368 || || | ||| |||||||| || || ||||| || ||||||||||||| |||||| Sbjct 2738309 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTG 2738254 >seq137 Length=909340 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || || || | |||||| || || || ||||| ||||||||||| Sbjct 668468 TGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAG 668527 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 668528 AAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTG 668587 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| || || || || |||||| | || || | |||||| ||| | Sbjct 668588 GAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAA 668647 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| || ||||| || || || ||||| || |||||||| ||||| Sbjct 668648 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || || || | |||||| || || || ||||| ||||||||||| Sbjct 668696 TGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAG 668755 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 668756 AAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTG 668815 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| || || || || |||||| | || || | |||||| ||| | Sbjct 668816 GAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAA 668875 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| || ||||| || || || ||||| || |||||||| ||||| Sbjct 668876 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| ||| | | | ||||| || ||| Sbjct 667582 TGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGT 667641 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||||||| || ||||| ||| || || |||||||| ||| ||| Sbjct 667642 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTG 667701 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || | ||| ||| || || || | ||| || || || || || Sbjct 667702 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 667761 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 667762 AGCGTCTTCACAAAGATTTGCATA 667785 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | || || ||||| || || || || || |||||||| ||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || ||||||||||| | |||||||| || ||||| ||| Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||| ||| ||| ||| | || || | ||| ||| || || Sbjct 675178 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 675119 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || || || || || || ||||| || ||||| Sbjct 675118 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATT 15218 |||||||| || || || || |||||||| ||| | ||| || | ||||| || | Sbjct 667126 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG--ACAATGTGCGACCATCTTCCAACT 667183 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | ||||||||| | ||||| ||||||||||| ||||| || || ||||| ||| | Sbjct 667184 GCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCT 667243 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 |||| ||| || | || || | ||| || || || || | ||| || || || || Sbjct 667244 TTGC-CTTCACGTTCTCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTTCCCA 667302 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || |||||| Sbjct 667303 GTCAGCGTCTTCACGAAGATCTGCATA 667329 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATT 15218 |||||||| || || || || |||||||| ||| | ||| || | ||||| || | Sbjct 675730 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG--ACAATGTGCGACCATCTTCCAACT 675673 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | |||||||| | ||||| ||||||||||| ||||| || || ||||| || | Sbjct 675672 GCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCT 675613 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 |||| ||| ||| | ||||| | || ||| || || || | ||| || || || || Sbjct 675612 TTGC-CTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCA 675554 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || |||||| Sbjct 675553 GTCAGCGTCTTCACGAAGATCTGCATA 675527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || ||||||||||| ||| | | ||||||| || || Sbjct 668265 ATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 668324 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||||||| ||||| || ||||| || || || || || || Sbjct 668325 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 668384 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||| | || || | ||| || ||| || |||| || || || || || || Sbjct 668385 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGT 668444 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 668445 TAGAGTCTTGACAAAGATCTGCAT 668468 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| ||||| || || || | | | ||||| || || Sbjct 668950 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 669009 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | ||||| ||||| |||||| || || ||||| ||| || Sbjct 669010 TTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 669069 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||||| ||| || || | ||||| || || || || Sbjct 669070 GCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTT 669129 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||||||||||||| Sbjct 669130 AGAGTTTTCACAAAAATTTGCAT 669152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154803495907