Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq122 98.7 8e-16 seq9 91.5 1e-13 seq137 82.4 6e-11 >seq122 Length=888848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 ||||| || || || || || || ||||| || || || ||||| ||||| |||| | | Sbjct 494799 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGC-C 494857 Query 21199 GTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 || ||| |||||||| |||| || || |||||||| | | ||||| ||||| ||||| Sbjct 494858 GTGGGGATTAAAGTGGGCGCCAGCCGAGGTGCAGCCTTGTGTTGTGTCACCGAATTCGTG 494917 Query 21258 AACGTGAAAGCCGTGC 21273 ||||||||||||||| Sbjct 494918 GACGTGAAAGCCGTGC 494933 >seq9 Length=3474131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | |||| || | || | || ||||||||||||||||| ||||| | Sbjct 2738486 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAG 2738427 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||||| ||| ||||| || | ||||| | || ||||| || Sbjct 2738426 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 2738367 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||||| |||||| | | | | ||| | ||||| Sbjct 2738366 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 2738307 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || | ||| || ||||||||||||||| Sbjct 2738306 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 >seq137 Length=909340 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||||||||| || || || | || || | || || Sbjct 668943 CACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTC 669002 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || |||||| | || || | ||||| ||| || | |||||| ||||| Sbjct 669003 CAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 669062 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | ||| || |||| || ||| || | ||||| || || Sbjct 669063 AATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTT 669122 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||| |||||||||||||| Sbjct 669123 GCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414544874246638