Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq137 116 2e-21 seq9 86.0 4e-12 seq383 84.2 1e-11 >seq137 Length=909340 Score = 116 bits (128), Expect = 2e-21 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||||||||| | | || | || || Sbjct 668487 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668546 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||| ||| ||| || ||||| |||||||| | || |||||||| || || Sbjct 668547 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668606 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| ||| |||||| ||| || || ||||| || Sbjct 668607 GATCTTCGCC---TTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGT 668663 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || ||||| |||||| Sbjct 668664 CTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668697 Score = 116 bits (128), Expect = 2e-21 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||||||||| | | || | || || Sbjct 668715 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668774 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||| ||| ||| || ||||| |||||||| | || |||||||| || || Sbjct 668775 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668834 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| ||| |||||| ||| || || ||||| || Sbjct 668835 GATCTTCGCC---TTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGT 668891 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || ||||| |||||| Sbjct 668892 CTTGCCGGTTAGAGTCTTGACAAAAATCTGCATG 668925 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || || || ||||||| || | || ||||| ||||| || Sbjct 668956 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 669015 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| |||| ||||||||||||| || ||||| || || || |||| | || Sbjct 669016 GCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 669075 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | || |||||| |||||| || ||||| || || || || || || |||||| Sbjct 669076 ACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 669135 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||||||||| Sbjct 669136 TTCACAAAAATTTGCAT 669152 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || || ||||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 657835 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCT 657894 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || | ||||||||||||| || ||||| || || || |||| | || Sbjct 657895 GCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 657954 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | |||| ||| |||| | || ||||| || || ||||| || || | ||| Sbjct 657955 ACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTC 658014 Query 33353 TTTACGAAAATTTGCAT 33369 || ||||| |||||||| Sbjct 658015 TTCACGAAGATTTGCAT 658031 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| |||||| || | || ||||| || || || ||||| || ||||| || | Sbjct 667339 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 667398 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || || ||||||||||||| || ||||| || Sbjct 667399 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCC 667458 Query 33272 TTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | ||||| || || | | |||| ||| | || | || |||| Sbjct 667459 TTGTCCTGGATCTTCGCC---TTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAC 667515 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || ||||| || || ||||||||| Sbjct 667516 GTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| || || || ||||||||||| | | || | ||| || Sbjct 668259 CACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTC 668318 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| ||| || || ||||| || || || | || ||||| || || || Sbjct 668319 CAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTG 668378 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| || |||||| ||| || || ||||| || Sbjct 668379 GATCTTCGCC---TTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGT 668435 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || || |||||| Sbjct 668436 CTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 668469 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| |||||| || | |||||||| || || || ||||| || ||||| || | Sbjct 668023 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 668082 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || || ||||||||||||| || ||||| || Sbjct 668083 CCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCC 668142 Query 33272 TTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | ||||| || || | | |||| ||| | || | || |||| Sbjct 668143 TTGTCCTGGATCTTCGCC---TTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAG 668199 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || ||||| || || || ||||| Sbjct 668200 GTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || |||| |||||| || | |||||||| || || || ||||| || ||||| || | Sbjct 675517 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 675458 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 || ||||| |||||||| ||| || || ||||||||||| | || ||||| || Sbjct 675457 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCC 675398 Query 33272 TTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | ||||| || || | | |||| ||| | || | || |||| Sbjct 675397 TTGTCCTGGATCTTCGCC---TTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAC 675341 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || ||||| || || |||||||| Sbjct 675340 GTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 >seq9 Length=3474131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||||||||| ||||| ||||| |||||||| | | | | ||| ||||| || Sbjct 2738463 ATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTG 2738404 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282 ||| || || || | ||||| || || | ||||| || ||||| || | | | Sbjct 2738403 CTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTT 2738344 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 || |||||| | | ||| | || | || | ||| || || ||||| |||||||| Sbjct 2738343 TGC---TTTTACGTTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCC 2738287 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||||||||| Sbjct 2738286 AGTGAGAGTCTTAACAAAAATTTGCAT 2738260 >seq383 Length=735259 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct 365907 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 365848 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 ||| || | ||| || ||||| | || || || || || || |||| ||| Sbjct 365847 GCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC--- 365791 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| | ||| ||| | || || ||||| || ||||| || |||||| Sbjct 365790 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 365731 Query 33350 GTTTTTACGAAAATTTGCATG 33370 ||||| || ||||| |||||| Sbjct 365730 GTTTTCACAAAAATCTGCATG 365710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756127041246