Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq137 87.8 1e-12 seq9 86.0 4e-12 >seq137 Length=909340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | ||| | | |||||| || ||||| ||| || ||||| || || ||| Sbjct 675299 ACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGA 675240 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| ||||| ||||| || ||||| ||||| || |||||||| | | Sbjct 675239 AAGAGTG-CGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTG 675181 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||| ||||| ||| ||| || || || | ||| | ||| ||||| | Sbjct 675180 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 675121 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | |||| || || || || ||||| | ||||||||||| || |||||| Sbjct 675120 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATG 675071 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| |||||||| || || || || || |||| ||||| || Sbjct 657373 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGC 657432 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||||||||| |||| |||||||| ||| | || | || || || ||| ||| ||| Sbjct 657433 TTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTT 657492 Query 44039 TGTTTGACCATAGCAA--CAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGG 44096 || || | | | ||| ||| |||||||| || | || |||||||| |||| Sbjct 657493 GCCTTCACATTCTCTATCGAGTCACTG--GGCTCCACCTCCAGTGTGATTGTTTTGCCGG 657550 Query 44097 TTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||||||| || || ||||| Sbjct 657551 TTAGAGTCTTCACGAAGATCTGCAT 657575 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||| || ||||| ||| || ||||| || || ||| | | || || |||| | Sbjct 667575 CACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTG-CGACCATCTT 667633 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||| ||||| || ||||| ||||| || |||||||| | || | ||| ||||| ||| Sbjct 667634 CCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTT 667693 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| || || || | ||| | ||| ||||| || |||| || || || | Sbjct 667694 GAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCT 667753 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| | ||||||||||| |||||||| Sbjct 667754 TCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 >seq9 Length=3474131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||||| || | ||| || || ||| ||||||||||||||||| Sbjct 2738486 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAG 2738427 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| | || ||||| || || || || || || | |||||| || || | ||| Sbjct 2738426 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 2738367 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| |||||| ||| || | ||| | ||| ||||| || Sbjct 2738366 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 2738307 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 2738306 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354753702069996