Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 156 4e-33 >seq5 Length=4770536 Score = 156 bits (172), Expect = 4e-33 Identities = 402/607 (66%), Gaps = 4/607 (1%) Strand=Plus/Minus Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||| ||||| || | ||||||||||| ||| | |||||||||| ||| || ||||| Sbjct 3307405 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 3307346 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||| || || || ||||| || || || || || | ||| || || | |||||| Sbjct 3307345 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 3307286 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| ||||| |||| ||||| | || || ||||| | || | || | |||| Sbjct 3307285 TGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 3307226 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 |||||| || | |||||| | ||||| | || || | ||| || || Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 ||| || |||||||| | | | | ||| | || | || ||||| || Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAAT 3307106 Query 13435 CAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAAC 13493 | | ||| | ||||| || |||||||| ||||||| || | ||| | |||||||||| Sbjct 3307105 C-AGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAAC 3307047 Query 13494 ATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | | |||||| | | || || ||| |||| | | || ||||| ||||| | Sbjct 3307046 AACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGA 3306987 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC-T 13612 | || ||||| || || || ||||| | | | | ||| || | ||| || | Sbjct 3306986 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCAT 3306927 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | ||||| ||| || | | ||| || | |||||| || |||||||| ||||| ||| Sbjct 3306926 TAAGACTTT-CCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 3306868 Query 13673 GAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACG 13732 || ||||| || ||||| || | | ||| ||||| | || ||||| | ||||||| Sbjct 3306867 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 3306808 Query 13733 TATCTTC 13739 |||||| Sbjct 3306807 AATCTTC 3306801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430953368890854