Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq137 163 7e-35 seq9 156 1e-32 seq383 127 5e-24 >seq137 Length=909340 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| |||||||| || |||||||||| ||| | ||| || Sbjct 667800 AAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGACCATC 667859 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || |||||||| || | | ||| |||||||| || || || || ||||| Sbjct 667860 CTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATC 667919 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || ||||||||||| || || || |||||||| Sbjct 667920 CTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGT 667979 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || ||||| ||||| Sbjct 667980 CTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 668012 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| ||||||||||| || || | ||| ||||| | || || || Sbjct 668956 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 669015 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||| | || || || || || || || || || || |||||||| || || Sbjct 669016 GCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 669075 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 669076 ACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 669135 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 669136 TTCACAAAAATTTGCAT 669152 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||||| ||||| | || ||||| || || || || |||||| Sbjct 657802 ATTCCACCTCGAAGACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 657861 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | || ||||| ||||| || || | || || || || Sbjct 657862 GACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGT 657921 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| |||| | || || || || Sbjct 657922 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 657981 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || ||||| | || || || || || ||||| Sbjct 657982 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 116 bits (128), Expect = 9e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || ||||| || |||||||| | || | ||| || Sbjct 657363 AAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATC 657422 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| ||||| || || | || ||||| || || || || || || || Sbjct 657423 TTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTC 657482 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| || ||||| |||| | || || || || ||||| ||||| || || Sbjct 657483 TTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGT 657542 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || || ||||||||| Sbjct 657543 TTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || || || | || ||||| |||||||| || ||||| || Sbjct 667102 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 667161 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | || || ||||| || || | | ||||| || || || Sbjct 667162 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGA 667221 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || || ||||||||||| || || || || | | ||| || || || ||| Sbjct 667222 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTCTCAATCGAATCACTCGGCTCAACC 667281 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| || || || || || |||||||| Sbjct 667282 TCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | || | ||| || || | || ||||| Sbjct 668044 GTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCT 668103 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || || ||||| ||||| || || Sbjct 668104 GCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 668163 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | || || ||||| || || || ||| Sbjct 668164 ACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 668223 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 668224 TTAACAAATATCTGCAT 668240 >seq9 Length=3474131 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 || || || |||| ||| || || || ||||| | ||| || || || ||||||||||| Sbjct 2738492 TTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAA 2738433 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 ||||| ||||| | ||||| || | || || || || || || |||| |||||||| Sbjct 2738432 TCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCT 2738373 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || |||||||| ||||| || || || ||||||||||| || || | || ||| || || Sbjct 2738372 GGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGC 2738313 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || ||||| || || || ||||| || |||||| Sbjct 2738312 TCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 >seq383 Length=735259 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| || ||||||| | | || || Sbjct 365923 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATC 365864 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || ||||||||||| || | |||||| || || || || || || || || Sbjct 365863 CTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTC 365804 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | | |||| || || ||||| || || ||||| Sbjct 365803 TTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGT 365744 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| |||||||| Sbjct 365743 TTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151316864082116