Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 seq137 87.8 2e-12 seq383 82.4 6e-11 >seq9 Length=3474131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | |||| || | ||| ||||| |||||||||||| || ||||||| Sbjct 2738486 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAG 2738427 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||||||| || | || | || || ||||| || Sbjct 2738426 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 2738367 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || ||||| ||||| ||| || | | | |||| ||| | | ||| Sbjct 2738366 ATTCCCTCTTTGTCTTGGATTTT-TGCTTTTACGTTCTCAATGGAATCACTTGGCTCAAC 2738308 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || |||||||| || |||||||| ||||| Sbjct 2738307 CTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 2738260 >seq137 Length=909340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||||||||||||||| |||| ||| || | || |||| |||| Sbjct 657373 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGC 657432 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | || ||||||||| || | | |||||||| ||| || Sbjct 657433 TTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTT 657492 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||| | || | | |||| ||| | ||| || ||||| ||||| Sbjct 657493 GCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTT 657552 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| || |||||||| Sbjct 657553 AGAGTCTTCACGAAGATCTGCAT 657575 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| | | ||| || ||||| || |||||| ||||||||||| || | | Sbjct 668014 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 668073 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||||| |||||| || | | || || || ||||| ||| || Sbjct 668074 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGG 668133 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || ||| ||| | | |||| | || | | |||| | Sbjct 668134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 668193 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| ||||| ||||| |||||||| Sbjct 668194 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||| || |||| || || | || |||| |||||| || | | Sbjct 668961 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 669020 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 |||| || ||||| ||| || | | |||||||| ||| ||| ||| | | Sbjct 669021 GATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 669080 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | | ||| ||| | || || || || ||||| ||||||||||| Sbjct 669081 CTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCAC 669140 Query 48715 AAAAATCTGCATCGTG 48730 |||||| ||||||||| Sbjct 669141 AAAAATTTGCATCGTG 669156 >seq383 Length=735259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||| |||||||||| || || | ||||||| ||| Sbjct 365913 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 365854 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | |||||| || || || | | |||||||| ||| || Sbjct 365853 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 365794 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || | ||||| | ||| ||| | || || ||||| ||||| Sbjct 365793 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 365734 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||||||||||||| Sbjct 365733 AGAGTTTTCACAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421222824387527