Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq137 107 2e-18 seq383 91.5 1e-13 seq9 89.7 5e-13 >seq137 Length=909340 Score = 107 bits (118), Expect = 2e-18 Identities = 174/249 (70%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94761 GTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 ||||| |||| ||| || || || | ||| |||| ||||||||| | || || ||| Sbjct 675319 GTTTTCACAAATATTTGCATACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCC 675260 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||| | |||| ||| |||| |||||| || ||||||| Sbjct 675259 TTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATC 675200 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 || | ||||| ||||| || ||||| |||||||| | ||| || ||||| || | Sbjct 675199 AAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCA 675140 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | | ||| | || || || | ||||| || || || ||||| || ||||||||| Sbjct 675139 ATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAG 675080 Query 95000 ATCTGCATG 95008 ||||||||| Sbjct 675079 ATCTGCATG 675071 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| |||| ||||||||| | || || ||||| || | ||| || ||| | Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||| ||| ||||| ||||||| || | |||||| ||||| || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| | | | |||| | || || Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| || || || ||||| || ||||||||||| || ||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| |||| ||||||||| | || || ||||| || | ||| || ||| | Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||| ||| ||||| ||||||| || | |||||| || || || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| | | | |||| | || || Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||| || || || ||||| || ||||||||||| || ||||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATGC 667558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || |||||||| | ||| || || || ||| ||| || Sbjct 657366 CACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTC 657425 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| ||||||| | | ||||||||| || ||||| || || ||||| | Sbjct 657426 CAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTG 657485 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| |||||||| || | | | |||| | | || || || | ||||| ||||| Sbjct 657486 AATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTT 657545 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||| Sbjct 657546 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 657575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | ||| | ||| | || || |||||||| | |||||| || || ||| Sbjct 668937 TCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACC 668996 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||||| | |||||| || || ||||| || || || Sbjct 668997 ATCTTCCAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTT 669056 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || ||| ||||| | | || || || | ||| || Sbjct 669057 GTCTTGAATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAAT 669116 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||||||||| || ||||| Sbjct 669117 TGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 669152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || |||||||| || | ||| || ||| || ||| ||| || Sbjct 675737 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTC 675678 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || ||||||| |||| ||| || ||||||||||| || || ||||| | Sbjct 675677 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 675618 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||| || | | | |||| | || || || | ||||| || || Sbjct 675617 GATCTTTGCCTTCACATTCTCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTT 675558 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 675557 CCCAGTCAGCGTCTTCACGAAGATCTGCAT 675528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 94761 GTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 ||||| |||| ||| || || || | || || | ||||| ||| | || || ||| Sbjct 667537 GTTTTCACAAATATTTGCATGCCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCC 667596 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 || || | ||| || ||| | |||| ||| |||| |||||| || ||||||| Sbjct 667597 TTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATC 667656 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 || | ||||| ||||| || ||||| |||||||| | ||| || ||||| || | Sbjct 667657 AAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCA 667716 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | | ||| | || || || | ||||| || || || ||||| || ||||||||| Sbjct 667717 ATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAG 667776 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 667777 ATTTGCAT 667784 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||| || || || ||| ||| |||| ||| ||||| Sbjct 657835 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCT 657894 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||| || || ||||| || || ||||| | ||| || ||||| Sbjct 657895 GCAAAGATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 657954 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | | |||| | | || || || | ||||| ||||| ||||| | ||| Sbjct 657955 ACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTC 658014 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| Sbjct 658015 TTCACGAAGATTTGCAT 658031 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || |||||||| || | ||| || ||| || ||| ||| || Sbjct 667119 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTC 667178 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | ||||| |||| ||| || ||||| ||||| || || ||||| | Sbjct 667179 CAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 667238 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| |||||||| ||| | | | ||| | || || || | ||||| || || Sbjct 667239 AATCTTTGCCTTCACGTTCTCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTT 667298 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 667299 CCCAGTCAGCGTCTTCACGAAGATCTGCAT 667328 >seq383 Length=735259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || |||| || | | || || ||||| ||||| || || || Sbjct 365866 ATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTT 365807 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || || | | | ||||| |||| ||||| Sbjct 365806 GTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGAT 365747 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||||||||||||||| |||||||||| Sbjct 365746 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATGC 365709 >seq9 Length=3474131 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || ||| | ||||| | | ||| |||||||| || || || |||||| Sbjct 2738414 TCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTG 2738355 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||||||| || ||| | | | ||| | ||| || || |||| || || Sbjct 2738354 TCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCA-CTTGGCTCAACCTCAAGGGTTAT 2738296 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| ||||| || ||||| || ||||| Sbjct 2738295 GGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260228681720