Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq381 159 5e-35 seq567 138 2e-28 seq222 132 8e-27 seq4893 131 3e-26 seq3201 131 3e-26 seq599 131 3e-26 seq295 131 3e-26 seq323 125 1e-24 seq2767 122 1e-23 seq2128 122 1e-23 >seq381 Length=639956 Score = 159 bits (176), Expect = 5e-35 Identities = 195/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 281684 GCAAAGCGCCATAGGAAAGTTCTTCGCGATAATATCCAAGGAATAACTAAGCCTGCTATT 281743 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| | ||||| | |||| || |||| Sbjct 281744 CGTCGTCTTGCGCGTCGTGGAGGTGTGAAGCGTATTTCTGGCCTCATCTACGAGGAGACC 281803 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || ||||| | ||| |||||| | ||| ||| || ||||| || Sbjct 281804 CGCGGTGTACTAAAAGTCTTCTTGGAGAACGTTATACGTGACGCTGTCACATATACTGAA 281863 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | || || || |||| ||||| || Sbjct 281864 CACGCCAAACGCAAGACCGTCACAGCCATGGACGTAGTTTACGCTCTGAAGCGTCAGGGT 281923 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | || || ||||| |||| Sbjct 281924 CGCACGCTCTACGGCTTTGGCGGTTA 281949 >seq567 Length=291906 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 222401 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 222460 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 222461 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 222520 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| ||| || || || |||||||| || | ||||| ||| Sbjct 222521 CTGGAGAACGTCATTCGTGACGCTGTCACGTACACTGAGCACGCGAAGAGGAAGACCGTC 222580 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 222581 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 222639 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 240418 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 240477 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 240478 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 240537 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| ||| || || || |||||||| || | ||||| ||| Sbjct 240538 CTGGAGAACGTCATTCGTGACGCTGTCACGTACACTGAGCACGCGAAGAGGAAGACCGTC 240597 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 240598 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 240656 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 265970 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 265911 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 265910 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 265851 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||| || || || || |||||||| || | ||||| ||| Sbjct 265850 CTGGAGAACGTCATTCGTGACGCCGTCACGTACACTGAGCACGCGAAGAGGAAGACCGTC 265791 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 265790 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 265732 >seq222 Length=250056 Score = 132 bits (146), Expect = 8e-27 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 178600 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 178659 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 178660 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTCCTG 178719 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| | || || |||||||| || || ||||| |||||| Sbjct 178720 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 178779 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 178780 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 178835 >seq4893 Length=20579 Score = 131 bits (144), Expect = 3e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 20090 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 20031 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 20030 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTCCTG 19971 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| | || || |||||||| || || ||||| |||||| Sbjct 19970 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 19911 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | ||||| | || ||||| | || ||||| ||||||| Sbjct 19910 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 19871 >seq3201 Length=16687 Score = 131 bits (144), Expect = 3e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 16136 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 16077 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 16076 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTCCTG 16017 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| | || || |||||||| || || ||||| |||||| Sbjct 16016 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 15957 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | ||||| | || ||||| | || ||||| ||||||| Sbjct 15956 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 15917 >seq599 Length=99389 Score = 131 bits (144), Expect = 3e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 98005 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 97946 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 97945 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTCCTG 97886 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| | || || |||||||| || || ||||| |||||| Sbjct 97885 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 97826 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | ||||| | || ||||| | || ||||| ||||||| Sbjct 97825 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 97786 >seq295 Length=171160 Score = 131 bits (144), Expect = 3e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 10657 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 10716 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 10717 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCGGGGTGTGCTCAAGGTGTTCCTG 10776 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| | || || |||||||| || || ||||| |||||| Sbjct 10777 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 10836 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | ||||| | || ||||| | || ||||| ||||||| Sbjct 10837 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 10876 >seq323 Length=53105 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || || ||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 15790 CGTGACAACATTCAGGGCATCACAAAGCCTGCTATTCGACGCCTGGCACGTCGTGGTGGA 15731 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 15730 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACACGGGGTGTACTCAAGGTGTTTCTG 15671 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||| | || || || |||||||| || || |||||||||||| Sbjct 15670 GAGAACGTAATTCGCGATTGTGTCACGTACACTGAGCACGCGAAGCGCAAGACTGTCACC 15611 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || ||||| | || || || ||||||| | ||||| || || || Sbjct 15610 GCAATGGACGTGGTGTATGCCCTCAAGCGCCAGGGCCGTACTCTGTATGGCTTCGGCGGT 15551 Query 16697 TA 16698 || Sbjct 15550 TA 15549 >seq2767 Length=13600 Score = 122 bits (134), Expect = 1e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 13300 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 13241 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 13240 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCG-GGTGTGCTCAAGGTGTTCCTG 13182 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG-TAAGACTGTCAC 16635 ||| ||| || | ||||||| | || || |||||||| || || ||||| ||||| Sbjct 13181 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAAGACCGTCAC 13122 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | | ||||| | || ||||| | || ||||| ||||||| Sbjct 13121 CGCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 13081 >seq2128 Length=4938 Score = 122 bits (134), Expect = 1e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 3768 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 3709 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| ||||||| | |||| ||||||| || | ||| | ||| | ||||| Sbjct 3708 GTGAAGCGCATCTCTGGGCTCATCTACGAAGAGACCCG-GGTGTGCTCAAGGTGTTCCTG 3650 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG-TAAGACTGTCAC 16635 ||| ||| || | ||||||| | || || |||||||| || || ||||| ||||| Sbjct 3649 GAGAACGTAATTCGTGATGCTGTGACGTACACTGAGCACGCGAAGCGCAAAGACCGTCAC 3590 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 | | ||||| | || ||||| | || ||||| ||||||| Sbjct 3589 CGCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTA 3549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070146625211