Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 262 5e-65 seq8 199 5e-46 >seq5 Length=4770536 Score = 262 bits (290), Expect = 5e-65 Identities = 510/750 (68%), Gaps = 11/750 (1%) Strand=Plus/Minus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 33293 || || || | || || ||| |||| | | || | || | |||||| Sbjct 3307459 GACTGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATATGTTT 3307400 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 3307399 AAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACT 3307340 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 ||| ||||| || ||||| || |||||||| || ||||| || |||||||| ||||| || Sbjct 3307339 AAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACC 3307280 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 ||||||||| | ||||| | ||||| || || | || | ||| | || ||| || Sbjct 3307279 AGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGGTGCC 3307222 Query 33474 GTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | | | |||||| | | ||||||||||||||||| ||||| |||| |||| Sbjct 3307221 TTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 3307162 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 | ||||| ||||| ||| ||| ||| | ||| || || || ||||| |||| | Sbjct 3307161 TGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAGA 3307102 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 ||| ||||| || |||||||||||||| | || | || | ||| || ||||| | | Sbjct 3307101 AGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACGA 3307042 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTC 33706 ||||||| ||| || || || ||||||| ||| | | ||||||||| || || | Sbjct 3307041 GCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGC 3306984 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33766 | |||||||| || || || ||||| |||| || || | ||| | | | Sbjct 3306983 CATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAA 3306924 Query 33767 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 | | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || || | Sbjct 3306923 GACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGG 3306864 Query 33827 CCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 | | || || || || | | ||| || |||| |||||||| || | | ||| |||| Sbjct 3306863 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 3306804 Query 33887 TATTTGGATTTGGTGCAAGGATGGGTTCCA 33916 | ||||| || |||| || ||||||| Sbjct 3306803 TTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 199 bits (220), Expect = 5e-46 Identities = 418/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 63195 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 602989 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 602931 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 602930 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 602871 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| | | | | ||| || || || ||||| | || | ||| || Sbjct 602870 AGAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 602811 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| | |||||| ||||| | || ||||| | | || || |||||||| || | Sbjct 602810 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGC 602751 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 ||||||| | || | ||||||| | || | || | | ||| || | || ||| || | Sbjct 602750 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 602691 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATA 63492 | ||||| || || | |||| | | | || || || || | | ||||| Sbjct 602690 ACTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 602634 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| || || || || |||| ||||| | ||| ||| |||| | ||||||||| |||| Sbjct 602633 GACCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 602574 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 |||| || || || || |||| |||| | ||||||||| ||||| || | | | Sbjct 602573 CCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCG 602514 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 602513 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 602454 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 602453 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 602394 Query 63733 TGTGCTGAGGTCTTTC 63748 ||| |||||| || || Sbjct 602393 TGTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622904162135320