Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 9e-15 seq8 84.2 6e-11 >seq5 Length=4770536 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494 || ||||| ||||||||||| | ||||| ||| || || | |||||| ||| Sbjct 3307181 AAGAAGGCCGATTGGGCGCTTAGGTGGATTGCGAATAAAAAGGCACCGTACGCGGAGCGT 3307240 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || | || || |||| | |||||| | ||||||||||| ||||| | | ||||| Sbjct 3307241 CTGGTGGCGTTCGCTGCTATCGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTC 3307300 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || ||| || ||| | || || ||| Sbjct 3307301 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGA 3307360 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| || || || || |||||||| || Sbjct 3307361 GATGAAGGCCTCCACACGGATTTTGCATG 3307389 >seq8 Length=2505178 Score = 84.2 bits (92), Expect = 6e-11 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| || ||||| | || | |||| |||| |||||||| ||||| |||||||||||| Sbjct 603144 CAGATCGAAACAGGCAATCCGTTTATGCTGTATAAAGATTCCTGCAATCGCAAGTCCAAC 603203 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || ||||| || || || || ||||| || || |||||| | || |||| Sbjct 603204 CATCAACACCTGGGAACCATAAAGTGCTCGAACCTTTGCACTGAGATTGTCGAGTACA-- 603261 Query 364264 GCTC-CCGAC-GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | || || || |||||||| || || || | || || || | ||||| Sbjct 603262 GTTCGCCTACAGAGACTGCTGTCTGCAATTTGGCTTCCATTTCTCTTCC 603310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303261303422114