Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq137 105 5e-18 seq383 96.9 3e-15 seq9 89.7 4e-13 >seq137 Length=909340 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| |||||||| || ||||||||||||| || || | || Sbjct 668028 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATC 668087 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || ||| | || | || || |||||| || | |||||| ||||| Sbjct 668088 CTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTC 668147 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | | ||| | |||||| |||| ||||||||| Sbjct 668148 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAAGGTGATGGT 668207 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 668208 CTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 100 bits (110), Expect = 2e-16 Identities = 185/267 (69%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCCGCATTTACCCTCCTCGTAGCCTCAGTACCAT 16731 ||||||||||| || ||||| | ||| | | ||||| || || | || || | Sbjct 657320 TTTATTTTAAA---TAA-ATTGTAT----GCAATCAGCCTCCACGAAGACGAAGCACAAG 657371 Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 || || |||||||||||||| ||||||||||| | || ||| | || ||||| || Sbjct 657372 GTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTG 657431 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TT 16849 || || ||| | || || || || || ||| || | |||||| ||||| || || Sbjct 657432 CTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 657491 Query 16850 TGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCG 16909 ||| |||||| | | | | ||| | ||||||| |||| ||||| ||||| ||| Sbjct 657492 TGC--CTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCG 657549 Query 16910 GTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || || || ||||||||| Sbjct 657550 GTTAGAGTCTTCACGAAGATCTGCATT 657576 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| | || ||| | || ||||| || Sbjct 668950 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 669009 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || |||||| | || || || || |||||| || | |||||| ||||| ||| | | Sbjct 669010 TTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 669069 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| ||| ||| |||| || || || || ||||| Sbjct 669070 GCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTT 669129 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||| ||||| Sbjct 669130 AGAGTTTTCACAAAAATTTGCAT 669152 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||| | ||| || ||||| |||||||| ||||||||||| | | Sbjct 657805 CCACCTCGAAGACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 657864 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || || || ||| | || || || || |||||| || Sbjct 657865 AAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGTGGA 657924 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | | |||||| | | | | ||| | ||||||| Sbjct 657925 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACC 657984 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||| || |||| || || || || || ||||| Sbjct 657985 TCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 658031 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| |||||||| || ||||||||||||| || || | || Sbjct 667344 CAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATC 667403 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || ||| | || | ||| || |||||| || | |||||| ||||| Sbjct 667404 CTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTC 667463 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | | ||| | |||||| |||| || || || Sbjct 667464 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGT 667523 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||| ||||| || ||||| Sbjct 667524 CTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| |||||||| || ||||||||||||| || || | || Sbjct 675512 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATC 675453 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || ||| | || | ||| || ||||| || | |||||| ||||| Sbjct 675452 CTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTC 675393 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | | ||| | |||||| |||| || || || Sbjct 675392 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGT 675333 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||| ||||| || ||||| Sbjct 675332 CTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| |||||||| || ||||||||||||| | || | || Sbjct 675284 CAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATC 675225 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| |||||||| ||| | || | ||||| ||||| || | ||||||||||| Sbjct 675224 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGTC 675165 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| | |||||| | | | | || | ||||| || | |||||| || Sbjct 675164 TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGT 675105 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| || ||||| |||||||| Sbjct 675104 CTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 >seq383 Length=735259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||| || | | || | ||||||||||| Sbjct 365913 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 365854 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| ||||||| ||||||||||| || | ||||| ||||| ||| | Sbjct 365853 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 365794 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || ||| |||||| || | ||||| ||||| ||||| Sbjct 365793 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 365734 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 365733 AGAGTTTTCACAAAAATCTGCAT 365711 >seq9 Length=3474131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||||||| || || || | ||| || || ||||||||||| || || || || | Sbjct 2738486 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAATCAGAG 2738427 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||||||||| || || || || | |||||||| ||||| || || Sbjct 2738426 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 2738367 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | | || | ||||| Sbjct 2738366 ATTCCCTCTTTGTCTTGGATTTTTGCT--TTTACGTTCTCAATGGAATCACTTGGCTCAA 2738309 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||||||||| || || || || |||||||| |||||| Sbjct 2738308 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 2738259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405060713145730