Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 250 3e-61 seq8 208 1e-48 >seq5 Length=4770536 Score = 250 bits (276), Expect = 3e-61 Identities = 512/754 (68%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 3307519 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGTAAGAAATTCGCATTCAATACT 3307460 Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 32646 ||| || || | || || || || | |||| | | || || |||||| | Sbjct 3307459 GACTGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTCACAATA--T 3307404 Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 3307403 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 3307344 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 3307343 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 3307284 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826 | ||||||||||| | ||||| | || || || || | || | ||| | || ||| Sbjct 3307283 AACCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 3307226 Query 32827 CGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 || | | | |||||| | | ||||||||||||||||| ||||| |||| Sbjct 3307225 TGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA 3307166 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 || | || || ||||| ||| ||| ||| | ||| || || || |||||||| Sbjct 3307165 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAAT 3307106 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 || |||| ||||| || |||||||||||||| | || | ||| | ||| || || || Sbjct 3307105 CAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACA 3307046 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACT 33059 | |||||||| ||| || || || ||||||| ||| | || ||||||||| || Sbjct 3307045 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 3306988 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 3306987 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 3306928 Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || Sbjct 3306927 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 3306868 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 33239 || || | || || || || | | ||| || ||||| ||||| || || | | ||| Sbjct 3306867 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 3306808 Query 33240 AATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 33273 ||||| ||||| |||| || ||||||| Sbjct 3306807 AATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 3306774 >seq8 Length=2505178 Score = 208 bits (230), Expect = 1e-48 Identities = 418/615 (68%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| || |||||| | | || || || || |||| || ||| || | Sbjct 602989 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 602930 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 602929 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 602870 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | | ||| || || || ||||| | || | ||| || Sbjct 602869 GAGATCCCGAGCGCGAATTTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 602810 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | |||||| ||||| | || ||||| | | || || |||||||| || || Sbjct 602809 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCGCC 602750 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 602749 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 602690 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 63348 ||||| || || | |||| | | | || || || || | | ||||| | Sbjct 602689 CTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 602633 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 602632 ACCGATCCCACCCGCGCTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 602573 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| ||||| || || |||| |||| | ||||||||| ||||| || | | || Sbjct 602572 CTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGT 602513 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || |||||||| | || || || |||||| | ||||| |||||||| | ||||||||| Sbjct 602512 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 602453 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| ||||| Sbjct 602452 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 602393 Query 63589 GTGCTGAGGTCTTTC 63603 || |||||| || || Sbjct 602392 GTACTGAGGCCTCTC 602378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633588223949200