Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 188 8e-43 >seq5 Length=4770536 Score = 188 bits (208), Expect = 8e-43 Identities = 485/730 (66%), Gaps = 14/730 (2%) Strand=Plus/Minus Query 92941 TATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGT 93000 ||| |||||| |||| || ||||||||| || | |||| ||||| || ||||| || Sbjct 3307540 TATATACTGACACATTAAGCGACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCCGT 3307481 Query 93001 CAAGAAAT---CTTTCTCGATTACA-ACGGCTTCTTTCAAGATTTCTATTACTCTACTAT 93056 ||||||| | ||| | ||| || || || ||| ||| || || | | || | Sbjct 3307480 -AAGAAATTCGCATTC---AATACTGACTGCCTCCCTCATGATGTC-ATAAACC--CTTT 3307428 Query 93057 TTG--GT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAAC 93113 | || || || | || | || || | || | ||| ||||| || || || | | Sbjct 3307427 CCGCCGTAGGCTTGTTCACAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGC 3307368 Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| |||| ||| || || || || | || || | || || || |||| Sbjct 3307367 CTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCT 3307308 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 ||||||| || || |||||||| ||||||||| |||| ||||| | || || || | Sbjct 3307307 TGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCCTTCGATAGCAGCGAACG 3307248 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| | ||| || || | ||| ||| | ||||| | | |||||||||| Sbjct 3307247 CCACCAGACGCTCCGCGTACGGTGCCTTTTTATTCGCAATCCACCTAAGCGCCCAATCGG 3307188 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 | || || || ||| || | |||| || |||||||| || | || || || || Sbjct 3307187 CCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCG 3307128 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTG 93413 ||| | ||| ||||| || | ||||| ||||| |||||||| | || |||| | Sbjct 3307127 GATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATCTCAGAATGAATGTTTTCCACAG 3307068 Query 93414 CAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCT 93473 | | ||| | ||| || ||||| | ||| || | || || || || | | |||| || Sbjct 3307067 CGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCA 3307008 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 ||||||||||| || || ||||| || || || |||||||| | || | | Sbjct 3307007 AAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAA 3306948 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 | || || ||| |||| ||||| | ||||| || | ||||| || | | ||| | Sbjct 3306947 TGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAA 3306888 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 |||| || || ||||| || || || | ||||| ||||| | ||||| || || || | Sbjct 3306887 CTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGT 3306828 Query 93654 ATTGAATTGG 93663 |||| || || Sbjct 3306827 ATTGGATGGG 3306818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822327879480