Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 127 4e-24 >seq5 Length=4770536 Score = 127 bits (140), Expect = 4e-24 Identities = 293/437 (67%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||||| ||| ||| ||||| || ||||| || || | | || | Sbjct 3306960 TGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTA 3307019 Query 42484 AAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | ||||| || | || ||||| || || || || || | || | || | || || Sbjct 3307020 ACGAGGTCCA--AATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCTGTGGAAAA 3307077 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || |||||| ||||| | ||| | | || ||| || |||||| | || || Sbjct 3307078 CATTCATTCTGAGATGTACTCTCTTCTGATTGATACCTACGTCAAGGATCCGATAGAACG 3307137 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||||| || ||||| | ||| |||| || | |||||||| || ||||| Sbjct 3307138 CGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGC 3307197 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| | ||||| | || | | ||| ||| || ||| | ||||| || || | || Sbjct 3307198 GCTTAGGTGGATTGCGAATAAAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGC 3307257 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 |||| ||| | ||||| || || | || || |||||||||||||||||| || || Sbjct 3307258 TATCGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGG 3307317 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || |||||||| ||||| || ||||| | || || || || || | Sbjct 3307318 TCTC-ATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACA 3307376 Query 42841 GGGACTTTGCCTGCCTC 42857 ||| ||||| |||||| Sbjct 3307377 CGGATTTTGCATGCCTC 3307393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944273957965520