Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq137 107 2e-18 seq383 84.2 2e-11 >seq137 Length=909340 Score = 107 bits (118), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 33888 TATGCAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAAT 33947 ||||||||| | ||||| | || || ||||| || ||||| ||| |||||| ||||| Sbjct 657338 TATGCAATC--AGCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAAT 657395 Query 33948 GTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTG 34007 |||||| || | ||| || | || ||||| ||||| || ||||| |||||||| || Sbjct 657396 GTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTG 657455 Query 34008 CTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-T 34066 ||||||| || | || ||| ||||| ||| ||| ||| | ||| | | | Sbjct 657456 CTGATCCGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCA-CATTCTCTATCGAGT 657514 Query 34067 CAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCA 34126 || | | || || | || |||||||| |||||||| || ||||| ||||| |||| Sbjct 657515 CACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCA 657574 Query 34127 TT 34128 || Sbjct 657575 TT 657576 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||| ||||||||||| ||||||||||||||||||||| | | | || || Sbjct 668251 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG-CG 668309 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || || |||| ||||| ||||| ||| | || ||| Sbjct 668310 ACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTC 668369 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 || || || || ||| | | |||| | |||| | | ||| ||| | || Sbjct 668370 CTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCG 668428 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || |||||||| || || |||||||| ||||| Sbjct 668429 TTATAGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 668468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| |||||||| |||||||||||||||||| || | Sbjct 667558 CCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 667617 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || ||||| || ||||| ||||| |||| |||||||| || || Sbjct 667618 AGAGTG-CGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 667676 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTC 34076 | | ||||||||| ||| || ||| | | || || | |||| ||| || Sbjct 667677 GATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCTC 667733 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||||||||| Sbjct 667734 AACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | || |||||||||| |||||||| |||||||||||||||||| || | Sbjct 667329 ACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGA 667388 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || ||||| ||||| || ||||| |||| || ||||| ||| || Sbjct 667389 CAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGG 667448 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | ||| | | ||| | | || Sbjct 667449 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCTATCGAGTCACTCGGCTCCA 667507 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| ||||| || || || || ||||||||||| |||||||| Sbjct 667508 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 |||||||||| |||||||| |||||||||||||||||| || | ||| || | Sbjct 668026 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCA 668085 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTG 34032 || ||||| ||||| || ||||| |||| ||| ||||| ||| || | || ||| ||| Sbjct 668086 TCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGGGATGCCCTCCTTG 668145 Query 34033 TCC 34035 ||| Sbjct 668146 TCC 668148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | || |||||||||| |||||||| |||||||||||||||||| || | Sbjct 675299 ACCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGA 675240 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || ||||| || ||||| ||||| |||| |||||||| || | Sbjct 675239 AAGAGTG-CGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTG 675181 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATT 34075 | | | ||||||||| ||| || ||| | | || || | |||| ||| | Sbjct 675180 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCT 675124 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| || || || || ||||| || || ||||||||||| ||||| Sbjct 675123 CAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 >seq383 Length=735259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| |||||||| | || || Sbjct 365928 AGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGT 365869 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| || || ||||| || || || | | ||| Sbjct 365868 CCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCC 365809 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA---TTCGACC 34086 ||||| ||| |||| | ||||| | ||| |||| ||| | |||||| Sbjct 365808 TTGTCTTGAAT------CTTA---GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 365758 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| ||||| || ||||||||||| || ||||| Sbjct 365757 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035653752654