Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq137 107 2e-18 >seq9 Length=3474131 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||||||||| ||||||| ||||||||| |||| || | ||||||||| ||||| Sbjct 2738451 CTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 2738392 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || || || || | ||| | | ||| ||||| ||||||| ||| | | Sbjct 2738391 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 2738332 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | | || || | || || || | || |||||||| || || || ||||| || Sbjct 2738331 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 2738272 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 2738271 AAAAATTTGCATT 2738259 >seq137 Length=909340 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||||| ||||| || | || || | ||||||||||| || Sbjct 668505 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 668564 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | || ||||| || ||| || || | | Sbjct 668565 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 668624 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||||| | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 668625 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 668684 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 668685 AAAAATCTGCAT 668696 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||||| ||||| || | || || | ||||||||||| || Sbjct 668733 CTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAA 668792 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | ||| | || ||||| || ||| || || | | Sbjct 668793 GATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTT 668852 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||||| | ||| || || | ||| ||||| ||||| ||||| ||||| || Sbjct 668853 CTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 668912 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 668913 AAAAATCTGCAT 668924 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| || || |||| ||| || || | || || | |||||| || || || Sbjct 668961 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 669020 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || || |||||||| | ||| | || |||||||| | ||| | || | || | Sbjct 669021 GATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 669079 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | |||||||| | |||||| || | ||| || || ||||| ||||| || || | Sbjct 669080 TCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCA 669139 Query 42196 CAAAGATTTGCATTTTCACGC 42216 |||| |||||||| | |||| Sbjct 669140 CAAAAATTTGCATCGTGACGC 669160 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| |||| || || || | || || | |||||| || || || Sbjct 657384 CTCCTTTTGAATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAA 657443 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || || ||||| || | ||| | || |||||||| | ||| | |||| || | Sbjct 657444 GATCAGGCGTTGCTGATCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTTCACAT 657502 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || ||| || | ||||| || | ||||| |||||||| ||||| ||||| | Sbjct 657503 TCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCA 657562 Query 42196 CAAAGATTTGCATT 42209 | ||||| |||||| Sbjct 657563 CGAAGATCTGCATT 657576 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||||| ||||| || |||| || | ||||||||||||||| Sbjct 668277 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 668336 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||| || || | || | || |||||| || ||| || || | | Sbjct 668337 AATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTT 668396 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || | ||| || || | ||| || || ||||| ||||| ||||| || Sbjct 668397 CTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATAGTCTTGCCGGTTAGAGTCTTGAC 668456 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 668457 AAAGATCTGCAT 668468 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| |||| || || || | || || | |||||| || || || Sbjct 657841 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAG 657900 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || || || |||||||| | ||| | || |||||||||| ||| | || | || | | Sbjct 657901 ATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACATT 657959 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || ||| || | ||||| || | ||||| |||||||| || | ||||| || Sbjct 657960 CTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCAC 658019 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 658020 GAAGATTTGCAT 658031 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||||| |||||| || | || |||||| ||||| ||||| || | ||||| || Sbjct 675289 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGA 675230 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | ||| || ||||| || || | ||||||||||| | ||| | | ||| Sbjct 675229 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCT 675170 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 |||| | ||| | || | || | || | | || || || | || || |||| || Sbjct 675169 TTGT-CTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGT 675111 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || |||||||| |||||||| ||||| Sbjct 675110 GATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | ||||| || | || || | ||| || ||||| || Sbjct 667593 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAA 667652 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||||| | ||| | | ||| |||| | ||| | || | || | Sbjct 667653 GATCAAACGCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTGAATCTTGGCCTTCACAT 667711 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || || || | || || |||| ||||| || || || || |||||||| | Sbjct 667712 TCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCA 667771 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 667772 CAAAGATTTGCAT 667784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543175270785680