Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq137 100 3e-16 >seq9 Length=3474131 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| || || || | ||| ||| |||||| | || ||||||| Sbjct 2738453 GACTCCTTTTGAATATTATAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCG 2738394 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || ||||| || || ||||| || |||||||| ||||||| ||||| Sbjct 2738393 AAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACG 2738334 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||| ||||| | || | ||||| ||||| ||||| || Sbjct 2738333 TTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTA 2738274 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 2738273 ACAAAAATTTGCAT 2738260 >seq137 Length=909340 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||||| || || || | |||||||||| ||||||||||||||| | Sbjct 667330 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAC 667389 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || || || | | |||| | || || |||||||| || Sbjct 667390 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGG 667449 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | | ||| ||| ||||||| Sbjct 667450 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 667509 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || |||||||| ||||| ||||| || |||||| Sbjct 667510 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCATG 667557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||||| || || || | |||||||||| ||||||||||||||| Sbjct 675298 CCACCACGCAAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAA 675239 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||||| || | | |||| | |||||| ||||| || || Sbjct 675238 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGG 675179 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| | || | || | | || | | || | | ||| || Sbjct 675178 ATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAAC 675120 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || || || || || || ||||| ||||||||| Sbjct 675119 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCATG 675071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||||| || || || | | |||||||| ||||||||||||||| | Sbjct 675526 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 675467 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || || || | | |||| | || || ||||| || || Sbjct 675466 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGG 675407 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | | ||| ||| ||||||| Sbjct 675406 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 675347 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || |||||||| ||||| ||||| || ||||| Sbjct 675346 TCCAACGTAATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||| || || || | | |||||||| ||||||||||||||| Sbjct 668013 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 668072 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | || || || | | |||| | || || |||||||| || Sbjct 668073 CAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTGG 668132 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | | ||| ||| |||||| Sbjct 668133 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCAC 668192 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || ||||| ||||| |||||||| Sbjct 668193 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||| ||||| || || || || || | || || || | Sbjct 668957 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 669016 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | ||||||| || || |||||||| || || || || ||||| ||| | || | || Sbjct 669017 CAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTTC 669075 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | |||||||| | ||| | || || || || |||||| Sbjct 669076 ACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 669135 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 669136 TTCACAAAAATTTGCAT 669152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228114471440