Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq137 113 4e-20 seq383 95.1 1e-14 seq9 91.5 1e-13 >seq137 Length=909340 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||| |||||||| || ||||| || | ||| | ||| || Sbjct 668943 CACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTC 669002 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | || | |||||||||||||| |||||||| || || ||||| Sbjct 669003 CAACTGCTTCCCCGCAAAGATTAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 669062 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | || | |||||| | || || || || |||| || || Sbjct 669063 AATCTTCGCCTTCACATTCTCGATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTT 669122 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||||||||||||| |||||||||||||||| Sbjct 669123 GCCGGTTAGAGTTTTCACAAAAATTTGCATCG 669154 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| |||||||| |||||||| || || ||||| | || ||| || Sbjct 668487 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668546 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| || |||||||| || ||||||||||| |||||||| Sbjct 668547 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668606 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | | ||| | || ||||| || || | || | Sbjct 668607 GATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCT 668665 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || |||||||| ||||| Sbjct 668666 TGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| |||||||| |||||||| || || ||||| | || ||| || Sbjct 668715 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668774 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| || |||||||| || ||||||||||| |||||||| Sbjct 668775 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668834 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | | ||| | || ||||| || || | || | Sbjct 668835 GATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCT 668893 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || |||||||| ||||| Sbjct 668894 TGCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| || || || || || |||||||| || || || || Sbjct 657349 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 657408 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| || |||||||| | |||| |||||||| ||||| ||| Sbjct 657409 AAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGATCCGGTGGA 657468 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || |||||||| ||| || | |||| | ||| | ||| || Sbjct 657469 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACC 657528 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || | ||||||||||||||||| || || || || ||||| ||| || Sbjct 657529 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATTCCGCCAC 657583 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || ||||| || || |||||||||||||| || || || Sbjct 657802 ATTCCACCTCGAAGACGGAGTACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 657861 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || |||||||| | |||| |||||||||||||| Sbjct 657862 GACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGGCGTTGCTGGTCCGGT 657921 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| || || | |||| | ||| | ||| Sbjct 657922 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 657981 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || || || || | |||||||| || | ||| || || || ||||||||| || Sbjct 657982 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATCACG 658035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || |||||||| ||||| || || || || ||| | || | ||| ||||| || Sbjct 667354 TGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGC 667413 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| | ||||| |||||||||||||| || ||||| || || || || || || Sbjct 667414 TTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 667473 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | |||| | ||| | ||| || || | |||| || || || || Sbjct 667474 GCCTTCA-CGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGT 667532 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| |||||||| Sbjct 667533 CAGCGTTTTCACAAATATTTGCAT 667556 >seq383 Length=735259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| || ||||| ||||| Sbjct 365937 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 365878 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | || | || || ||||| || ||| Sbjct 365877 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 365818 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || |||||||| || || | || | | ||||| | |||||| Sbjct 365817 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 365758 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||||||||||| |||||||| |||||||| ||||| Sbjct 365757 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 365711 >seq9 Length=3474131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 45105 TATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 || || || ||||| || || || | || ||||| || || || |||||||| |||||| Sbjct 2738495 TACTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTA 2738436 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 ||||| || || || ||||| || || || ||| | || | ||||| || Sbjct 2738435 TAATCAGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 2738376 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283 || || || || || ||||| ||||| |||||| ||| | || | || | || || Sbjct 2738375 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCAATGGAATCACT 2738317 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || | ||||| || || ||||| || |||||||||||||| Sbjct 2738316 TGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 2738260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451971972228920