Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8 123 4e-23 seq5 95.1 2e-14 >seq8 Length=2505178 Score = 123 bits (136), Expect = 4e-23 Identities = 308/465 (66%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 |||| || ||||||| |||| | | |||||||| | | |||||| ||||| || Sbjct 604374 TTGTTGACAGTGAACTTGATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCC 604315 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || || ||| |||| | ||||| | | ||| | |||||| Sbjct 604314 GTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGC 604255 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || ||||| | ||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 604254 TCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCC 604195 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 | || || || | ||||| | |||||||| || || ||| | | | || ||| | Sbjct 604194 AAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCCTTGATGTCT 604135 Query 204080 TGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | | || | |||||| | || || | | | || | | || || Sbjct 604134 TCTGGAATTCCGTCA-ATATCCTGAATGGATCCCTGATTAGAAATGATCGCCGTCTTCAG 604076 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 || ||| ||| ||||| | ||||| || || | || ||| | ||| | || || Sbjct 604075 CTGATCCGACCAAATGCCAAGATCAATCAGATCACGAAGCATGTGCGAGTTAACAATTTG 604016 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 ||||| || |||||||| | || || || | |||| |||| | ||||||| || ||| Sbjct 604015 GAAGTCGCCCGACAGCACACGACGAGTAAATACGTTGCTGGTTACTGGTTCGGTCGACTC 603956 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 |||| || | ||||||||| || |||||||||||| ||||| Sbjct 603955 TGTGTTACCCAGAATCTGAGCCGTCGAGGCCGTGGGCATAGGAGC 603911 >seq5 Length=4770536 Score = 95.1 bits (104), Expect = 2e-14 Identities = 338/525 (64%), Gaps = 5/525 (1%) Strand=Plus/Minus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||||| | |||||| ||||| || ||| || || || || ||| ||| | |||||| Sbjct 3307401 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 3307342 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| ||||||| |||||| |||||||| || |||| ||||| | | Sbjct 3307341 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 3307282 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| || | || || | || || |||||||| || | ||| | | | || Sbjct 3307281 CCAGAAAAGAATACGCCTTCGATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 3307222 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGC 160150 || | | ||||||| ||||| || |||||||| || | ||||||| || Sbjct 3307221 TTTTTATTCGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAA-CGT 3307163 Query 160151 TCGAC-GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 | || ||||||||||| ||| | || || |||||||| ||| ||||||| Sbjct 3307162 TTGAATGGCGTTAAACAGAAAGTCGCGTTCTATCGGATCCTTGACGTAGGTATCAATCAG 3307103 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 |||||||| || | || | ||||| | || | || | || ||| | Sbjct 3307102 AAGAGAGTACATCTCAGAATGAATGTTTTCCACAGCGACTTGCATTCCATAAAAACAACG 3307043 Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329 ||||| || || ||||| | || | | ||||| ||||||| | || Sbjct 3307042 AGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCC 3306983 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||| ||||||||||| || | || ||||| || | |||| | | || || Sbjct 3306982 ATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAG 3306923 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 | ||||||||| || | || | || |||||||| || || Sbjct 3306922 AC---TTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTC 3306881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795100264715120