Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20multiceps_20[genbank_20GCA_5F001923025.1_202016-12-28] 5,527 sequences; 240,089,990 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq137 143 3e-29 >seq137 Length=909340 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||| ||||| || | || |||||| || || |||||||||| Sbjct 668012 TGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 668071 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || || | |||||| || || || |||||||| |||||||| | | Sbjct 668072 ACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCCGGTG 668131 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||||| ||| | || | | || ||| |||| |||| Sbjct 668132 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCA 668191 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 668192 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 668240 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||||| ||||| || | || |||||| || || ||||||||||| | ||||| Sbjct 667339 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 667398 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || | |||||| || || || ||||| || |||||||| | || | || |||| Sbjct 667399 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCCGGTGGGATGCCCTCC 667458 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| ||||||| ||| | || | | || ||| |||| ||||| |||| ||| Sbjct 667459 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTA 667518 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||||||||| ||||| |||||||| Sbjct 667519 ATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 667556 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||||| ||||| || | || |||||| || || ||||||||||| | ||||| Sbjct 675517 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGA 675458 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || | |||||| || || || ||||| || |||||||| | || | || |||| Sbjct 675457 CCATCCTCCAACTGCTTTCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATGCCCTCC 675398 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| ||||||| ||| | || | | || ||| |||| ||||| |||| ||| Sbjct 675397 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTA 675338 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||||||||| ||||| |||||||| Sbjct 675337 ATTGTCTTCCCAGTCAGCGTTTTCACAAATATTTGCAT 675300 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||||| | || || | |||||| || || || Sbjct 657841 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAG 657900 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||| |||||||| | || | || |||||||||| |||||| ||| | || Sbjct 657901 ATCAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 657960 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || | ||||| |||| ||||| |||||||| |||| || || || Sbjct 657961 TCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACG 658020 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 658021 AAGATTTGCAT 658031 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || ||||||||| || ||||| || || |||||||| | || || Sbjct 668487 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668546 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| || || || ||||| ||||||||||| | || | || ||||| || Sbjct 668547 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668606 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | || ||||| | ||| || || | ||| ||||| || Sbjct 668607 GATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTT 668666 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||| || ||||| Sbjct 668667 GCCGGTTAGAGTCTTGACAAAAATCTGCAT 668696 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || ||||||||| || ||||| || || |||||||| | || || Sbjct 668715 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 668774 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| || || || ||||| ||||||||||| | || | || ||||| || Sbjct 668775 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 668834 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | || ||||| | ||| || || | ||| ||||| || Sbjct 668835 GATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTT 668894 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||| || ||||| Sbjct 668895 GCCGGTTAGAGTCTTGACAAAAATCTGCAT 668924 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| || | || |||||| || || |||||||||| Sbjct 667556 TGCCACCACGCAGACGAAGCACCAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGG 667615 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || | ||| ||||| || || ||||| ||||||||||| | | Sbjct 667616 AAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTG 667675 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| ||||| ||||| ||| | || | | || || || | || | Sbjct 667676 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 667735 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||| || || || || ||||| || |||||||||||||| Sbjct 667736 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 667784 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| | ||||| | || || | ||||||||| || || Sbjct 675718 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCAAAG 675659 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || ||||| | || | || |||||||||| |||||| ||| | || Sbjct 675658 ATCAATCGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTC 675599 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || | || || || | ||||| || || || |||||||| || || Sbjct 675598 TCTATCGAGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 675539 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 675538 AAGATCTGCAT 675528 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||||| ||||| || | || |||||| || || ||||||||||| |||||||| Sbjct 675289 AAACGCAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGA 675230 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || | ||| ||||| || || ||||| ||||||||||| | || | | ||| Sbjct 675229 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCCTCT 675170 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||||| ||| | || | | || || || | || || || | ||| Sbjct 675169 TTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTG 675110 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| || |||||||| ||||| Sbjct 675109 ATAGTCTTCCCGGTAAGCGTCTTCACAAAGATCTGCAT 675072 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| | ||||| | || || | ||||||||| ||||| Sbjct 667138 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 667197 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || ||||| | || | || ||||||||| ||||| ||| | || Sbjct 667198 ATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTC 667257 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || |||| || || || | ||||| || || || |||||||| || || Sbjct 667258 TCAATCGAATCACTCGGCTCAACCTCGAGGGTGATAGTCTTCCCAGTCAGCGTCTTCACG 667317 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 667318 AAGATCTGCAT 667328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199349092040